From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 13/18] gnu: Add r-chipkernels.
Date: Thu, 24 Nov 2016 17:51:34 +0100 [thread overview]
Message-ID: <20161124165139.13740-14-rekado@elephly.net> (raw)
In-Reply-To: <20161124165139.13740-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
---
gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7bcac59..98dad40 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7485,6 +7485,42 @@ traits. It also includes a number of utility functions for data manipulation
and visualization.")
(license license:gpl2+)))
+(define-public r-chipkernels
+ (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
+ (revision "1"))
+ (package
+ (name "r-chipkernels")
+ (version (string-append "1.1-" revision "." (string-take commit 9)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ManuSetty/ChIPKernels.git")
+ (commit commit)))
+ (file-name (string-append name "-" version))
+ (sha256
+ (base32
+ "14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-iranges" ,r-iranges)
+ ("r-xvector" ,r-xvector)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-gtools" ,r-gtools)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-sfsmisc" ,r-sfsmisc)
+ ("r-kernlab" ,r-kernlab)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://github.com/ManuSetty/ChIPKernels")
+ (synopsis "Build string kernels for DNA Sequence analysis")
+ (description "ChIPKernels is an R package for building different string
+kernels used for DNA Sequence analysis. A dictionary of the desired kernel
+must be built and this dictionary can be used for determining kernels for DNA
+Sequences.")
+ (license license:gpl2+))))
+
(define-public emboss
(package
(name "emboss")
--
2.10.2
next prev parent reply other threads:[~2016-11-24 16:52 UTC|newest]
Thread overview: 27+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-11-24 16:51 [PATCH 00/18] Add R packages Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 01/18] gnu: Add r-rematch Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 02/18] gnu: Add r-cellranger Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 03/18] gnu: Add r-googlesheets Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 04/18] gnu: Add r-spams Ricardo Wurmus
2016-11-25 4:12 ` Leo Famulari
2016-11-28 21:39 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 05/18] gnu: Add r-r4rna Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 06/18] gnu: Add r-dynamictreecut Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 07/18] gnu: Add r-preprocesscore Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 08/18] gnu: Add r-fastcluster Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 09/18] gnu: Add r-wgcna Ricardo Wurmus
2016-11-25 10:38 ` Ben Woodcroft
2016-11-28 21:45 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 10/18] gnu: Add r-sfsmisc Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 11/18] gnu: Add r-kernlab Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 12/18] gnu: Add r-gtools Ricardo Wurmus
2016-11-24 16:51 ` Ricardo Wurmus [this message]
2016-11-24 16:51 ` [PATCH 14/18] gnu: Add r-seqgl Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 15/18] gnu: Add r-gdata Ricardo Wurmus
2016-11-25 4:17 ` Leo Famulari
2016-11-24 16:51 ` [PATCH 16/18] gnu: Add r-gplots Ricardo Wurmus
2016-11-25 4:16 ` Leo Famulari
2016-11-25 22:53 ` Ludovic Courtès
2016-11-28 21:47 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 17/18] gnu: Add r-rocr Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 18/18] gnu: Add r-gkmsvm Ricardo Wurmus
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