From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 14/18] gnu: Add r-seqgl.
Date: Thu, 24 Nov 2016 17:51:35 +0100 [thread overview]
Message-ID: <20161124165139.13740-15-rekado@elephly.net> (raw)
In-Reply-To: <20161124165139.13740-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 98dad40..89a9db1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7521,6 +7521,36 @@ must be built and this dictionary can be used for determining kernels for DNA
Sequences.")
(license license:gpl2+))))
+(define-public r-seqgl
+ (package
+ (name "r-seqgl")
+ (version "1.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ManuSetty/SeqGL/"
+ "archive/" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-chipkernels" ,r-chipkernels)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-spams" ,r-spams)
+ ("r-wgcna" ,r-wgcna)
+ ("r-fastcluster" ,r-fastcluster)))
+ (home-page "https://github.com/ManuSetty/SeqGL")
+ (synopsis "Group lasso for Dnase/ChIP-seq data")
+ (description "SeqGL is a group lasso based algorithm to extract
+transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles.
+This package presents a method which uses group lasso to discriminate between
+bound and non bound genomic regions to accurately identify transcription
+factors bound at the specific regions.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
--
2.10.2
next prev parent reply other threads:[~2016-11-24 16:52 UTC|newest]
Thread overview: 27+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-11-24 16:51 [PATCH 00/18] Add R packages Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 01/18] gnu: Add r-rematch Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 02/18] gnu: Add r-cellranger Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 03/18] gnu: Add r-googlesheets Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 04/18] gnu: Add r-spams Ricardo Wurmus
2016-11-25 4:12 ` Leo Famulari
2016-11-28 21:39 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 05/18] gnu: Add r-r4rna Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 06/18] gnu: Add r-dynamictreecut Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 07/18] gnu: Add r-preprocesscore Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 08/18] gnu: Add r-fastcluster Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 09/18] gnu: Add r-wgcna Ricardo Wurmus
2016-11-25 10:38 ` Ben Woodcroft
2016-11-28 21:45 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 10/18] gnu: Add r-sfsmisc Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 11/18] gnu: Add r-kernlab Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 12/18] gnu: Add r-gtools Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 13/18] gnu: Add r-chipkernels Ricardo Wurmus
2016-11-24 16:51 ` Ricardo Wurmus [this message]
2016-11-24 16:51 ` [PATCH 15/18] gnu: Add r-gdata Ricardo Wurmus
2016-11-25 4:17 ` Leo Famulari
2016-11-24 16:51 ` [PATCH 16/18] gnu: Add r-gplots Ricardo Wurmus
2016-11-25 4:16 ` Leo Famulari
2016-11-25 22:53 ` Ludovic Courtès
2016-11-28 21:47 ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 17/18] gnu: Add r-rocr Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 18/18] gnu: Add r-gkmsvm Ricardo Wurmus
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