From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 13/18] gnu: Add r-chipkernels. Date: Thu, 24 Nov 2016 17:51:34 +0100 Message-ID: <20161124165139.13740-14-rekado@elephly.net> References: <20161124165139.13740-1-rekado@elephly.net> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:43923) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1c9xGL-00062P-B9 for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:44 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1c9xGK-0002hn-Iq for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:41 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21400) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1c9xGK-0002gx-9j for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:40 -0500 In-Reply-To: <20161124165139.13740-1-rekado@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-chipkernels): New variable. --- gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7bcac59..98dad40 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7485,6 +7485,42 @@ traits. It also includes a number of utility functions for data manipulation and visualization.") (license license:gpl2+))) +(define-public r-chipkernels + (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372") + (revision "1")) + (package + (name "r-chipkernels") + (version (string-append "1.1-" revision "." (string-take commit 9))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ManuSetty/ChIPKernels.git") + (commit commit))) + (file-name (string-append name "-" version)) + (sha256 + (base32 + "14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-iranges" ,r-iranges) + ("r-xvector" ,r-xvector) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-gtools" ,r-gtools) + ("r-genomicranges" ,r-genomicranges) + ("r-sfsmisc" ,r-sfsmisc) + ("r-kernlab" ,r-kernlab) + ("r-s4vectors" ,r-s4vectors) + ("r-biocgenerics" ,r-biocgenerics))) + (home-page "https://github.com/ManuSetty/ChIPKernels") + (synopsis "Build string kernels for DNA Sequence analysis") + (description "ChIPKernels is an R package for building different string +kernels used for DNA Sequence analysis. A dictionary of the desired kernel +must be built and this dictionary can be used for determining kernels for DNA +Sequences.") + (license license:gpl2+)))) + (define-public emboss (package (name "emboss") -- 2.10.2