unofficial mirror of guix-devel@gnu.org 
 help / color / mirror / code / Atom feed
From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 09/18] gnu: Add r-wgcna.
Date: Thu, 24 Nov 2016 17:51:30 +0100	[thread overview]
Message-ID: <20161124165139.13740-10-rekado@elephly.net> (raw)
In-Reply-To: <20161124165139.13740-1-rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
---
 gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 254ee13..7bcac59 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7449,6 +7449,42 @@ characterization and visualization of a wide range of mutational patterns
 in SNV base substitution data.")
     (license license:expat)))
 
+(define-public r-wgcna
+  (package
+    (name "r-wgcna")
+    (version "1.51")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "WGCNA" version))
+       (sha256
+        (base32
+         "0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"))))
+    (properties `((upstream-name . "WGCNA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-doparallel" ,r-doparallel)
+       ("r-dynamictreecut" ,r-dynamictreecut)
+       ("r-fastcluster" ,r-fastcluster)
+       ("r-foreach" ,r-foreach)
+       ("r-go-db" ,r-go-db)
+       ("r-hmisc" ,r-hmisc)
+       ("r-impute" ,r-impute)
+       ("r-matrixstats" ,r-matrixstats)
+       ("r-preprocesscore" ,r-preprocesscore)))
+    (home-page
+     "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
+    (synopsis "Weighted correlation network analysis")
+    (description
+     "This package provides functions necessary to perform Weighted
+Correlation Network Analysis on high-dimensional data.  It includes functions
+for rudimentary data cleaning, construction of correlation networks, module
+identification, summarization, and relating of variables and modules to sample
+traits.  It also includes a number of utility functions for data manipulation
+and visualization.")
+    (license license:gpl2+)))
+
 (define-public emboss
   (package
     (name "emboss")
-- 
2.10.2

  parent reply	other threads:[~2016-11-24 16:52 UTC|newest]

Thread overview: 27+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-11-24 16:51 [PATCH 00/18] Add R packages Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 01/18] gnu: Add r-rematch Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 02/18] gnu: Add r-cellranger Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 03/18] gnu: Add r-googlesheets Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 04/18] gnu: Add r-spams Ricardo Wurmus
2016-11-25  4:12   ` Leo Famulari
2016-11-28 21:39     ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 05/18] gnu: Add r-r4rna Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 06/18] gnu: Add r-dynamictreecut Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 07/18] gnu: Add r-preprocesscore Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 08/18] gnu: Add r-fastcluster Ricardo Wurmus
2016-11-24 16:51 ` Ricardo Wurmus [this message]
2016-11-25 10:38   ` [PATCH 09/18] gnu: Add r-wgcna Ben Woodcroft
2016-11-28 21:45     ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 10/18] gnu: Add r-sfsmisc Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 11/18] gnu: Add r-kernlab Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 12/18] gnu: Add r-gtools Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 13/18] gnu: Add r-chipkernels Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 14/18] gnu: Add r-seqgl Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 15/18] gnu: Add r-gdata Ricardo Wurmus
2016-11-25  4:17   ` Leo Famulari
2016-11-24 16:51 ` [PATCH 16/18] gnu: Add r-gplots Ricardo Wurmus
2016-11-25  4:16   ` Leo Famulari
2016-11-25 22:53     ` Ludovic Courtès
2016-11-28 21:47       ` Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 17/18] gnu: Add r-rocr Ricardo Wurmus
2016-11-24 16:51 ` [PATCH 18/18] gnu: Add r-gkmsvm Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20161124165139.13740-10-rekado@elephly.net \
    --to=rekado@elephly.net \
    --cc=guix-devel@gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).