From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 09/18] gnu: Add r-wgcna. Date: Thu, 24 Nov 2016 17:51:30 +0100 Message-ID: <20161124165139.13740-10-rekado@elephly.net> References: <20161124165139.13740-1-rekado@elephly.net> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:43718) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1c9xG7-0005pY-KS for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:28 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1c9xG6-0002WY-7J for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:27 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21479) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1c9xG5-0002Vc-UE for guix-devel@gnu.org; Thu, 24 Nov 2016 11:52:26 -0500 In-Reply-To: <20161124165139.13740-1-rekado@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-wgcna): New variable. --- gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 254ee13..7bcac59 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7449,6 +7449,42 @@ characterization and visualization of a wide range of mutational patterns in SNV base substitution data.") (license license:expat))) +(define-public r-wgcna + (package + (name "r-wgcna") + (version "1.51") + (source + (origin + (method url-fetch) + (uri (cran-uri "WGCNA" version)) + (sha256 + (base32 + "0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx")))) + (properties `((upstream-name . "WGCNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-doparallel" ,r-doparallel) + ("r-dynamictreecut" ,r-dynamictreecut) + ("r-fastcluster" ,r-fastcluster) + ("r-foreach" ,r-foreach) + ("r-go-db" ,r-go-db) + ("r-hmisc" ,r-hmisc) + ("r-impute" ,r-impute) + ("r-matrixstats" ,r-matrixstats) + ("r-preprocesscore" ,r-preprocesscore))) + (home-page + "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") + (synopsis "Weighted correlation network analysis") + (description + "This package provides functions necessary to perform Weighted +Correlation Network Analysis on high-dimensional data. It includes functions +for rudimentary data cleaning, construction of correlation networks, module +identification, summarization, and relating of variables and modules to sample +traits. It also includes a number of utility functions for data manipulation +and visualization.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss") -- 2.10.2