[bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[Paul A. Patience]

This patch series must be applied on top of the v2 patches in bug#50080 [1].
It adds SUNDIALS to deal.II's dependencies and updates deal.II to the latest
version.
Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos to
compile, even though it doesn't seem to have changed since commit
06c11434c9288bc70ba958227d47d31d5e46eda7, which added the
trilinos-for-dealii-openmpi package.
Non-MPI deal.II compiles fine with this patch series.

In other words, this patch series is probably fine to push, but we still need
to address Trilinos's failing build.

I would appreciate it if anyone (Ludovic?) could try building dealii-openmpi
(and therefore trilinos-for-dealii-openmpi) with this patch series applied, to
check if the problem is only on my end or not.

[1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=50080

Paul A. Patience (5):
  gnu: sundials: Add 5.8.0.
  gnu: dealii: Remove trailing booleans.
  gnu: dealii-openmpi: Remove input labels.
  gnu: dealii: Add SUNDIALS dependency.
  gnu: dealii: Update to 9.3.3.

 gnu/local.mk                                  |  2 -
 gnu/packages/maths.scm                        | 83 ++++++++++++-------
 ...lii-fix-compiliation-with-boost-1.78.patch | 40 ---------
 .../patches/dealii-fix-sundials.patch         | 60 --------------
 4 files changed, 54 insertions(+), 131 deletions(-)
 delete mode 100644 gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch
 delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch

--
2.36.0

[bug#55170] [PATCH 1/5] gnu: sundials: Add 5.8.0.

[Paul A. Patience]

* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New
variables.
---
 gnu/packages/maths.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index e97f732def..dbb9bf1cf3 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -6190,6 +6190,29 @@ (define-public sundials-openmpi
              ,%openmpi-setup)))))
     (synopsis "SUNDIALS with MPI support")))

+(define-public sundials-5
+  (package
+    (inherit sundials)
+    (name "sundials")
+    (version "5.8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/LLNL/sundials/releases/download/v"
+                           version "/sundials-" version ".tar.gz"))
+       (sha256
+        (base32
+         "04x2x0jchf9kbcw2a1c6f4h4as8sr6k2snfz8z9k897pa4rl1vfl"))))))
+
+(define-public sundials-openmpi-5
+  (package/inherit sundials-5
+    (name "sundials-openmpi")
+    (propagated-inputs
+     (package-propagated-inputs sundials-openmpi))
+    (arguments
+     (package-arguments sundials-openmpi))
+    (synopsis (package-synopsis sundials-openmpi))))
+
 (define-public sundials-julia
   (package
     (inherit sundials)
--
2.36.0

[bug#55170] [PATCH 2/5] gnu: dealii: Remove trailing booleans.

[Paul A. Patience]

* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and
therefore the 'begin').
[native-inputs, inputs]: Reindent.
[arguments]<#:phases>: Remove trailing boolean.
---
 gnu/packages/maths.scm | 23 ++++++++++-------------
 1 file changed, 10 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index dbb9bf1cf3..3c96378a4e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5183,22 +5183,20 @@ (define-public dealii
                                 "dealii-fix-sundials.patch"))
        (modules '((guix build utils)))
        (snippet
-        '(begin
-           ;; Remove bundled boost, muparser, TBB and UMFPACK.
-           (delete-file-recursively "bundled")
-           #t))))
+        ;; Remove bundled boost, muparser, TBB and UMFPACK.
+        '(delete-file-recursively "bundled"))))
     (build-system cmake-build-system)
     (outputs '("out" "doc"))
     (native-inputs
      ;; Required to build the documentation.
-      (list graphviz doxygen perl))
+     (list graphviz doxygen perl))
     (inputs
-      (list arpack-ng
-            openblas
-            gfortran
-            lapack
-            muparser
-            zlib))
+     (list arpack-ng
+           openblas
+           gfortran
+           lapack
+           muparser
+           zlib))
     (propagated-inputs
      ;; Some scripts are installed into share/deal.II/scripts that require
      ;; perl and python, but they are not executable (and some are missing the
@@ -5235,8 +5233,7 @@ (define-public dealii
              (let ((doc (string-append (assoc-ref outputs "doc")
                                        "/share/doc/" ,name "-" ,version)))
                (for-each delete-file (map (lambda (f) (string-append doc "/" f))
-                                          '("detailed.log" "summary.log"))))
-             #t)))))
+                                          '("detailed.log" "summary.log")))))))))
     (home-page "https://www.dealii.org/")
     (synopsis "Finite element library")
     (description
--
2.36.0

[bug#55170] [PATCH 3/5] gnu: dealii-openmpi: Remove input labels.

[Paul A. Patience]

* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels.
[propagated-inputs]: Same.
---
 gnu/packages/maths.scm | 24 +++++++++++++-----------
 1 file changed, 13 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3c96378a4e..e6ebada82b 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5248,18 +5248,20 @@ (define-public dealii-openmpi
   (package/inherit dealii
     (name "dealii-openmpi")
     (inputs
-     `(("arpack" ,arpack-ng-openmpi)
-       ("metis" ,metis)
-       ("scalapack" ,scalapack)
-       ,@(alist-delete "arpack" (package-inputs dealii))))
+     (modify-inputs (package-inputs dealii)
+       (delete "arpack")
+       (prepend arpack-ng-openmpi
+                metis
+                scalapack)))
     (propagated-inputs
-     `(("hdf5" ,hdf5-parallel-openmpi)
-       ("mpi" ,openmpi)
-       ("p4est" ,p4est-openmpi)
-       ("petsc" ,petsc-openmpi)
-       ("slepc" ,slepc-openmpi)
-       ("trilinos" ,trilinos-for-dealii-openmpi)
-       ,@(alist-delete "hdf5" (package-propagated-inputs dealii))))
+     (modify-inputs (package-propagated-inputs dealii)
+       (delete "hdf5")
+       (prepend hdf5-parallel-openmpi
+                openmpi
+                p4est-openmpi
+                petsc-openmpi
+                slepc-openmpi
+                trilinos-for-dealii-openmpi)))
     (arguments
      (substitute-keyword-arguments (package-arguments dealii)
        ((#:configure-flags flags)
--
2.36.0

[bug#55170] [PATCH 4/5] gnu: dealii: Add SUNDIALS dependency.

[Paul A. Patience]

* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5.
Reformat list to clarify comment.
(dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5.
---
 gnu/packages/maths.scm | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index e6ebada82b..c74f055a07 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5205,7 +5205,11 @@ (define-public dealii
      ;; Anyway, they are meant to be used at build time, so rather than adding
      ;; the interpreters here, any package depending on them should just add
      ;; the requisite interpreter to its native inputs.
-     (list boost hdf5 suitesparse ; For UMFPACK.
+     (list boost
+           hdf5
+           suitesparse                  ; For UMFPACK.
+           ;; SUNDIALS 6.0.0 and later will be supported in deal.II 9.4.0.
+           sundials-5
            tbb))
     (arguments
      `(#:build-type "DebugRelease" ; Supports only Debug, Release and DebugRelease.
@@ -5255,12 +5259,13 @@ (define-public dealii-openmpi
                 scalapack)))
     (propagated-inputs
      (modify-inputs (package-propagated-inputs dealii)
-       (delete "hdf5")
+       (delete "hdf5" "sundials")
        (prepend hdf5-parallel-openmpi
                 openmpi
                 p4est-openmpi
                 petsc-openmpi
                 slepc-openmpi
+                sundials-openmpi-5
                 trilinos-for-dealii-openmpi)))
     (arguments
      (substitute-keyword-arguments (package-arguments dealii)
--
2.36.0

[bug#55170] [PATCH 5/5] gnu: dealii: Update to 9.3.3.

[Paul A. Patience]

* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
---
 gnu/local.mk                                  |  2 -
 gnu/packages/maths.scm                        |  6 +-
 ...lii-fix-compiliation-with-boost-1.78.patch | 40 -------------
 .../patches/dealii-fix-sundials.patch         | 60 -------------------
 4 files changed, 2 insertions(+), 106 deletions(-)
 delete mode 100644 gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch
 delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch

diff --git a/gnu/local.mk b/gnu/local.mk
index 9bad87710c..d84d2bee3d 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -994,8 +994,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/dbus-c++-gcc-compat.patch		\
   %D%/packages/patches/dbus-c++-threading-mutex.patch		\
   %D%/packages/patches/dbxfs-remove-sentry-sdk.patch		\
-  %D%/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch	\
-  %D%/packages/patches/dealii-fix-sundials.patch		\
   %D%/packages/patches/debops-constants-for-external-program-names.patch \
   %D%/packages/patches/debops-debops-defaults-fall-back-to-less.patch \
   %D%/packages/patches/dee-vapi.patch			\
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index c74f055a07..2d3e67a6b4 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5171,16 +5171,14 @@ (define trilinos-for-dealii-openmpi
 (define-public dealii
   (package
     (name "dealii")
-    (version "9.3.2")
+    (version "9.3.3")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/dealii/dealii/releases/"
                            "download/v" version "/dealii-" version ".tar.gz"))
        (sha256
-        (base32 "1s0kawnljg24jj6nibwrif5gxdgg2daqfylhqqpl1lvmzmmxfhak"))
-       (patches (search-patches "dealii-fix-compiliation-with-boost-1.78.patch"
-                                "dealii-fix-sundials.patch"))
+        (base32 "0a8s4yxcbvzmfgv5qcg27h2ss4fcnyhrhhs35glqj59l9cbmkysx"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove bundled boost, muparser, TBB and UMFPACK.
diff --git a/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch b/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch
deleted file mode 100644
index 1937aa9afc..0000000000
--- a/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-From cbef761731627cece2a6f0276b87dacabbdc8a72 Mon Sep 17 00:00:00 2001
-From: David Wells <drwells@email.unc.edu>
-Date: Tue, 4 Jan 2022 12:46:30 -0500
-Subject: [PATCH] Fix compilation with boost 1.78.
-
-I bisected (fortunately Boost.Geometry a header-only library so adding the
-include directory sufficed) and
-https://github.com/boostorg/geometry/commit/6eb9e238bcb37e26dc31d16acf826784a2ba30f4
-is where this problem starts for us. See also
-https://github.com/boostorg/geometry/issues/792 - the easiest fix for all such
-issues is to just include the project header `boost/geometry/geometry.hpp`.
-
-In this particular case, if you look at the commit which causes grid_tools.cc
-fails to compile, its because we were relying on some implicit includes. In
-particular, we need the distance header to find the distance between points and
-boxes, but that was previously included in another file.
-
-This patch has been adapted from
-e0e76835519d122fd12b5858e16d08641a641c6a to apply to dealii 9.3.2.
-
-See https://github.com/dealii/dealii/pull/13165.
----
- include/deal.II/numerics/rtree.h | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/include/deal.II/numerics/rtree.h b/include/deal.II/numerics/rtree.h
-index 1b9d04dacd..1e1bfd2932 100644
---- a/include/deal.II/numerics/rtree.h
-+++ b/include/deal.II/numerics/rtree.h
-@@ -26,6 +26,7 @@
- #include <deal.II/boost_adaptors/segment.h>
-
- DEAL_II_DISABLE_EXTRA_DIAGNOSTICS
-+#include <boost/geometry/algorithms/distance.hpp>
- #include <boost/geometry/index/rtree.hpp>
- #include <boost/geometry/strategies/strategies.hpp>
- DEAL_II_ENABLE_EXTRA_DIAGNOSTICS
---
-2.30.2
-
diff --git a/gnu/packages/patches/dealii-fix-sundials.patch b/gnu/packages/patches/dealii-fix-sundials.patch
deleted file mode 100644
index 7dd5df45da..0000000000
--- a/gnu/packages/patches/dealii-fix-sundials.patch
+++ /dev/null
@@ -1,60 +0,0 @@
-From af73f368f7f9d4a00df075d1a9f50fc495f8e87a Mon Sep 17 00:00:00 2001
-From: Timo Heister <timo.heister@gmail.com>
-Date: Sat, 25 Dec 2021 12:30:45 -0500
-Subject: [PATCH] fix sundials compilation
-
----
- include/deal.II/sundials/n_vector.templates.h | 11 ++++++-----
- 1 file changed, 6 insertions(+), 5 deletions(-)
-
-diff --git a/include/deal.II/sundials/n_vector.templates.h b/include/deal.II/sundials/n_vector.templates.h
-index 2b49e3efc9..746f63a03b 100644
---- a/include/deal.II/sundials/n_vector.templates.h
-+++ b/include/deal.II/sundials/n_vector.templates.h
-@@ -253,13 +253,13 @@ namespace SUNDIALS
-       template <
-         typename VectorType,
-         typename std::enable_if_t<!IsBlockVector<VectorType>::value, int> = 0>
--      MPI_Comm
-+      const MPI_Comm &
-       get_communicator(N_Vector v);
-
-       template <
-         typename VectorType,
-         typename std::enable_if_t<IsBlockVector<VectorType>::value, int> = 0>
--      MPI_Comm
-+      const MPI_Comm &
-       get_communicator(N_Vector v);
-
-       /**
-@@ -481,7 +481,7 @@ SUNDIALS::internal::NVectorOperations::destroy(N_Vector v)
-
- template <typename VectorType,
-           std::enable_if_t<IsBlockVector<VectorType>::value, int>>
--MPI_Comm
-+const MPI_Comm &
- SUNDIALS::internal::NVectorOperations::get_communicator(N_Vector v)
- {
-   return unwrap_nvector_const<VectorType>(v)->block(0).get_mpi_communicator();
-@@ -491,7 +491,7 @@ SUNDIALS::internal::NVectorOperations::get_communicator(N_Vector v)
-
- template <typename VectorType,
-           std::enable_if_t<!IsBlockVector<VectorType>::value, int>>
--MPI_Comm
-+const MPI_Comm &
- SUNDIALS::internal::NVectorOperations::get_communicator(N_Vector v)
- {
-   return unwrap_nvector_const<VectorType>(v)->get_mpi_communicator();
-@@ -519,7 +519,8 @@ SUNDIALS::internal::NVectorOperations::get_communicator_as_void_ptr(N_Vector v)
-   (void)v;
-   return nullptr;
- #  else
--  return get_communicator<VectorType>(v);
-+  // We need to cast away const here, as SUNDIALS demands a pure `void *`.
-+  return &(const_cast<MPI_Comm &>(get_communicator<VectorType>(v)));
- #  endif
- }
-
---
-2.30.2
-
--
2.36.0

[bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[Ludovic Courtès]

Hello,

"Paul A. Patience" <paul@apatience.com> skribis:

> This patch series must be applied on top of the v2 patches in bug#50080 [1].
> It adds SUNDIALS to deal.II's dependencies and updates deal.II to the latest
> version.

Awesome.

> Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos to
> compile, even though it doesn't seem to have changed since commit
> 06c11434c9288bc70ba958227d47d31d5e46eda7, which added the
> trilinos-for-dealii-openmpi package.
> Non-MPI deal.II compiles fine with this patch series.
>
> In other words, this patch series is probably fine to push, but we still need
> to address Trilinos's failing build.
>
> I would appreciate it if anyone (Ludovic?) could try building dealii-openmpi
> (and therefore trilinos-for-dealii-openmpi) with this patch series applied, to
> check if the problem is only on my end or not.
>
> [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=50080

For me ‘sundials-openmpi-5.8.0’ fails like this:

--8<---------------cut here---------------start------------->8---
-- CXX standard set to 11
Appending C RELWITHDEBINFO flags
Appending CXX RELWITHDEBINFO flags
Appending Fortran RELWITHDEBINFO flags
-- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) (Required is at least version "2.0.0")
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) (Required is at least version "2.0.0")
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIB_NAMES MPI_Fortran_F77_HEADER_DIR MPI_Fortran_MODULE_DIR MPI_Fortran_WORKS) (Required is at least version "2.0.0")
CMake Error at /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
  Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND MPI_Fortran_FOUND)
  (Required is at least version "2.0.0")
Call Stack (most recent call first):
  /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
  /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cmake-3.21/Modules/FindMPI.cmake:1748 (find_package_handle_standard_args)
  cmake/tpl/SundialsMPI.cmake:71 (find_package)
  cmake/SundialsSetupTPLs.cmake:22 (include)
  CMakeLists.txt:168 (include)


-- Configuring incomplete, errors occurred!
See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMakeOutput.log".
See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMakeError.log".
error: in phase 'configure': uncaught exception:
%exception #<&invoke-error program: "cmake" arguments: ("../sundials-5.8.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DENABLE_MPI:BOOL=ON" "-DCMAKE_C_FLAGS=-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=ON" "-DEXAMPLES_ENABLE_CXX:BOOL=ON" "-DEXAMPLES_ENABLE_F77:BOOL=ON" "-DEXAMPLES_ENABLE_F90:BOOL=ON" "-DEXAMPLES_INSTALL:BOOL=OFF" "-DFCMIX_ENABLE:BOOL=ON" "-DKLU_ENABLE:BOOL=ON" "-DKLU_INCLUDE_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib") exit-status: 1 term-signal: #f stop-signal: #f> 
phase `configure' failed after 3.2 seconds
command "cmake" "../sundials-5.8.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DENABLE_MPI:BOOL=ON" "-DCMAKE_C_FLAGS=-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=ON" "-DEXAMPLES_ENABLE_CXX:BOOL=ON" "-DEXAMPLES_ENABLE_F77:BOOL=ON" "-DEXAMPLES_ENABLE_F90:BOOL=ON" "-DEXAMPLES_INSTALL:BOOL=OFF" "-DFCMIX_ENABLE:BOOL=ON" "-DKLU_ENABLE:BOOL=ON" "-DKLU_INCLUDE_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib" failed with status 1
builder for `/gnu/store/nrj3w5gmy3g00880hwh3gxkp3kgzpxgd-sundials-openmpi-5.8.0.drv' failed with exit code 1
--8<---------------cut here---------------end--------------->8---

So it seems there’s a problem earlier than expected?

Thanks,
Ludo’.

[bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[Paul A. Patience]

On 2022-04-29 08:02:27-04:00, Ludovic Courtès wrote:
> "Paul A. Patience" <paul@apatience.com> skribis:
>> This patch series must be applied on top of the v2 patches in bug#50080 [1].
>> It adds SUNDIALS to deal.II's dependencies and updates deal.II to the latest
>> version.
>
> %exception #<&invoke-error program: "cmake" arguments: ("../sundials-5.8.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DENABLE_MPI:BOOL=ON" "-DCMAKE_C_FLAGS=-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=ON" "-DEXAMPLES_ENABLE_CXX:BOOL=ON" "-DEXAMPLES_ENABLE_F77:BOOL=ON" "-DEXAMPLES_ENABLE_F90:BOOL=ON" "-DEXAMPLES_INSTALL:BOOL=OFF" "-DFCMIX_ENABLE:BOOL=ON" "-DKLU_ENABLE:BOOL=ON" "-DKLU_INCLUDE_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib") exit-status: 1 term-signal: #f stop-signal: #f>

Did you apply the v2 patches (well, now v3) in bug#50080 [1]?
The configure flags contain EXAMPLES_ENABLE_F77, among others, which I
removed in bug#50080.

Best regards,
Paul

[1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=50080

[bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[Ludovic Courtès]

"Paul A. Patience" <paul@apatience.com> skribis:

> Did you apply the v2 patches (well, now v3) in bug#50080 [1]?

Oops, my bad.  Retesting now…

Ludo’.

bug#55170: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3.

[Ludovic Courtès]

Hi again,

"Paul A. Patience" <paul@apatience.com> skribis:

>   gnu: sundials: Add 5.8.0.
>   gnu: dealii: Remove trailing booleans.
>   gnu: dealii-openmpi: Remove input labels.
>   gnu: dealii: Add SUNDIALS dependency.
>   gnu: dealii: Update to 9.3.3.

Pushed as 8b2d26660717a0f352da54acd68e0d61a7c697df.  Works like a charm
now, thanks!

Ludo’.