From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp11.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id wKe3FxXUa2IvpAAAbAwnHQ (envelope-from ) for ; Fri, 29 Apr 2022 14:03:33 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp11.migadu.com with LMTPS id oPouGBXUa2JkUAAA9RJhRA (envelope-from ) for ; Fri, 29 Apr 2022 14:03:33 +0200 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 005539270 for ; Fri, 29 Apr 2022 14:03:33 +0200 (CEST) Received: from localhost ([::1]:35668 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nkPLP-0000Wb-RI for larch@yhetil.org; Fri, 29 Apr 2022 08:03:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:54114) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nkPKw-0000V9-U0 for guix-patches@gnu.org; Fri, 29 Apr 2022 08:03:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57169) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nkPKw-0005Uv-LV for guix-patches@gnu.org; Fri, 29 Apr 2022 08:03:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nkPKv-00038j-Iu for guix-patches@gnu.org; Fri, 29 Apr 2022 08:03:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 29 Apr 2022 12:03:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55170 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: "Paul A. Patience" Cc: 55170@debbugs.gnu.org Received: via spool by 55170-submit@debbugs.gnu.org id=B55170.165123375512036 (code B ref 55170); Fri, 29 Apr 2022 12:03:01 +0000 Received: (at 55170) by debbugs.gnu.org; 29 Apr 2022 12:02:35 +0000 Received: from localhost ([127.0.0.1]:51066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nkPKV-000383-9e for submit@debbugs.gnu.org; Fri, 29 Apr 2022 08:02:35 -0400 Received: from mail2-relais-roc.national.inria.fr ([192.134.164.83]:21283) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nkPKT-00032W-M0 for 55170@debbugs.gnu.org; Fri, 29 Apr 2022 08:02:34 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:references:date:in-reply-to: message-id:mime-version:content-transfer-encoding; bh=xI80feiPsfVJak28K1omyvZvVhc2qRogWWL2l1HDmnM=; b=YH2m8xvTs3YQrsnHKi0sXA9/T9gghvGjvRFhBbMdACJt8vzgDN+lds+z a+/ctIvrewUlAmykszZI7MJXqz+Xb9CyN/QbLdIEP+TL4LIA1HVm8PqEN l6JX/ZkKOsYqwrgrmPFMeaTCnzsQrxA4jpY/7ztBABcjGT/krU2ivMroy k=; X-IronPort-AV: E=Sophos;i="5.91,185,1647298800"; d="scan'208";a="33957796" Received: from unknown (HELO ribbon) ([193.50.110.83]) by mail2-relais-roc.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 29 Apr 2022 14:02:27 +0200 From: Ludovic =?UTF-8?Q?Court=C3=A8s?= References: <20220428181532.281677-1-paul@apatience.com> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: 10 =?UTF-8?Q?Flor=C3=A9al?= an 230 de la =?UTF-8?Q?R=C3=A9volution?= X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Fri, 29 Apr 2022 14:02:27 +0200 In-Reply-To: <20220428181532.281677-1-paul@apatience.com> (Paul A. Patience's message of "Thu, 28 Apr 2022 18:15:39 +0000") Message-ID: <87tuac85d8.fsf@inria.fr> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1651233813; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=xI80feiPsfVJak28K1omyvZvVhc2qRogWWL2l1HDmnM=; b=Fs3x6/PdAvW16NXcDDmLFKbAc0+EDbO8LMkU/ue4M67RVGtOAENpYqwtqHPQqZgOMHLDfj vdIAIebGZXe6S8/czldgAakX5dLBUd1Xa88tL6dr+w3XajnZbtC0qxxukRe7cuEVqM5sw9 DtmHXWHZvRQyvfQspnvcyRV5rXooCCRoLX8aCHvEQLqgDp2PjUL1hUDErFoW5xkGORSGkD 60vnNhPChH/fquKQmR5jB2bY6XiGDFu1vq2NWDQZqxJW+WhFJt1mjYw3mGavNnrTteJ2RI 4QA5dC8qQPtjCGufpfQC5ewHTIhhaOKrPxM3tP1rGFoMXLLW1nl090AppfReRw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1651233813; a=rsa-sha256; cv=none; b=uQnpXh0DqjDXVdRfEBbLlv+UESk5GoNV0OIubNoxZ0wYmYiScpfnML9X0F35hteYgPj9aY OVIwCScGtGpZ1LRJwQU1wvhYZJSx3Nm/wQCmW1Vy2Coansrsi/C+faE4DaOwJ/LCcnzJ3m gtmKVTIrlUxNg927vWaR+GNBaxLsQn0YwzQymuz6DKcoP150SysmPhkl2b2XT6AU3tyemW u8R60BHPM9mgE9cvz+5vibgPciHzgvWZKbwG3cmqthtNCjQ2juE0m24giFZSGv2XR8ghqx OH1idweyIkh0oCt3owUp+nhbIm/jq3/OFt3zSYfa86AGcqqfmYm6GonspftTiQ== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=inria.fr header.s=dc header.b=YH2m8xvT; dmarc=fail reason="SPF not aligned (relaxed)" header.from=inria.fr (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.80 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=inria.fr header.s=dc header.b=YH2m8xvT; dmarc=fail reason="SPF not aligned (relaxed)" header.from=inria.fr (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 005539270 X-Spam-Score: 5.80 X-Migadu-Scanner: scn1.migadu.com X-TUID: +CqT6ek2U24O Hello, "Paul A. Patience" skribis: > This patch series must be applied on top of the v2 patches in bug#50080 [= 1]. > It adds SUNDIALS to deal.II's dependencies and updates deal.II to the lat= est > version. Awesome. > Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos= to > compile, even though it doesn't seem to have changed since commit > 06c11434c9288bc70ba958227d47d31d5e46eda7, which added the > trilinos-for-dealii-openmpi package. > Non-MPI deal.II compiles fine with this patch series. > > In other words, this patch series is probably fine to push, but we still = need > to address Trilinos's failing build. > > I would appreciate it if anyone (Ludovic?) could try building dealii-open= mpi > (and therefore trilinos-for-dealii-openmpi) with this patch series applie= d, to > check if the problem is only on my end or not. > > [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D50080 For me =E2=80=98sundials-openmpi-5.8.0=E2=80=99 fails like this: --8<---------------cut here---------------start------------->8--- -- CXX standard set to 11 Appending C RELWITHDEBINFO flags Appending CXX RELWITHDEBINFO flags Appending Fortran RELWITHDEBINFO flags -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WO= RKS) (Required is at least version "2.0.0") -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MP= I_CXX_WORKS) (Required is at least version "2.0.0") -- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIB_NAMES MPI_Fortran_F= 77_HEADER_DIR MPI_Fortran_MODULE_DIR MPI_Fortran_WORKS) (Required is at lea= st version "2.0.0") CMake Error at /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.= 21.4/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:230 (mess= age): Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND MPI_Fortran_FOUND) (Required is at least version "2.0.0") Call Stack (most recent call first): /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cm= ake-3.21/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_ME= SSAGE) /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cm= ake-3.21/Modules/FindMPI.cmake:1748 (find_package_handle_standard_args) cmake/tpl/SundialsMPI.cmake:71 (find_package) cmake/SundialsSetupTPLs.cmake:22 (include) CMakeLists.txt:168 (include) -- Configuring incomplete, errors occurred! See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMa= keOutput.log". See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMa= keError.log". error: in phase 'configure': uncaught exception: %exception #<&invoke-error program: "cmake" arguments: ("../sundials-5.8.0"= "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=3D/gnu/store= /95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTALL_= LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=3DTRUE" "-DCMAKE_INSTALL= _RPATH=3D/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0= /lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-DENABLE_MPI:BOOL=3DON" "-DCMAKE_C_F= LAGS=3D-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=3DON" "-DEXAMPLES_ENABLE_= CXX:BOOL=3DON" "-DEXAMPLES_ENABLE_F77:BOOL=3DON" "-DEXAMPLES_ENABLE_F90:BOO= L=3DON" "-DEXAMPLES_INSTALL:BOOL=3DOFF" "-DFCMIX_ENABLE:BOOL=3DON" "-DKLU_E= NABLE:BOOL=3DON" "-DKLU_INCLUDE_DIR=3D/gnu/store/cp95d1qfj1vsjn95rzj0f035rs= 966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=3D/gnu/store/cp95d1qf= j1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib") exit-status: 1 term-signa= l: #f stop-signal: #f>=20 phase `configure' failed after 3.2 seconds command "cmake" "../sundials-5.8.0" "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "= -DCMAKE_INSTALL_PREFIX=3D/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundia= ls-openmpi-5.8.0" "-DCMAKE_INSTALL_LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE= _LINK_PATH=3DTRUE" "-DCMAKE_INSTALL_RPATH=3D/gnu/store/95ax5rqb6k1rkfii2i2n= nbjfazr58zvi-sundials-openmpi-5.8.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-= DENABLE_MPI:BOOL=3DON" "-DCMAKE_C_FLAGS=3D-O2 -g -fcommon" "-DEXAMPLES_ENAB= LE_C:BOOL=3DON" "-DEXAMPLES_ENABLE_CXX:BOOL=3DON" "-DEXAMPLES_ENABLE_F77:BO= OL=3DON" "-DEXAMPLES_ENABLE_F90:BOOL=3DON" "-DEXAMPLES_INSTALL:BOOL=3DOFF" = "-DFCMIX_ENABLE:BOOL=3DON" "-DKLU_ENABLE:BOOL=3DON" "-DKLU_INCLUDE_DIR=3D/g= nu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/include" "-DKL= U_LIBRARY_DIR=3D/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.1= 0.1/lib" failed with status 1 builder for `/gnu/store/nrj3w5gmy3g00880hwh3gxkp3kgzpxgd-sundials-openmpi-5= .8.0.drv' failed with exit code 1 --8<---------------cut here---------------end--------------->8--- So it seems there=E2=80=99s a problem earlier than expected? Thanks, Ludo=E2=80=99.