From: Ricardo Wurmus <rekado@elephly.net>
To: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
Cc: 61220@debbugs.gnu.org
Subject: [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2.
Date: Tue, 07 Feb 2023 10:30:23 +0100 [thread overview]
Message-ID: <87y1p96cuj.fsf@elephly.net> (raw)
In-Reply-To: <20230202022657.67003-10-madalinionel.patrascu@mdc-berlin.de>
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-adacgh2): New variable.
[…]
> (define-module (gnu packages bioconductor)
> #:use-module ((guix licenses) #:prefix license:)
> + #:use-module (guix gexp)
[…]
> + (arguments
> + (list
> + #:phases
> + #~(modify-phases %standard-phases
> + (add-before 'configure 'set-PYTHONPATH
> + (lambda _
> + (setenv "PYTHONPATH"
> + (string-append (getcwd) ":"
> + (getenv "GUIX_PYTHONPATH"))))))))
This phase seems unnecessary.
> + ;; This is needed by toMap.py script which is not compatible with python3
> + (inputs (list python2-minimal))
The only reason for Python 2 is the outdated “print”, which is not
called as a function but used as a statement. I patched it instead.
--
Ricardo
next prev parent reply other threads:[~2023-02-07 9:32 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-02-02 2:23 [bug#61220] [patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2 MadalinIonel.Patrascu
2023-02-02 2:26 ` [bug#61220] [PATCH 01/10] gnu: Add r-glad Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 02/10] gnu: Add r-italicsdata Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 03/10] gnu: Add r-pd-mapping50k-xba240 Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 04/10] gnu: Add r-italics Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 05/10] gnu: Add r-manor Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 07/10] gnu: Add r-snapcgh Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 08/10] gnu: Add r-quantsmooth Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 09/10] gnu: Add r-beadarraysnp Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2 Mădălin Ionel Patrașcu
2023-02-07 9:30 ` Ricardo Wurmus [this message]
2023-02-07 9:31 ` bug#61220: [PATCH 01/10] gnu: Add r-glad Ricardo Wurmus
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