From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <61220@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray.
Date: Thu, 2 Feb 2023 03:26:53 +0100 [thread overview]
Message-ID: <20230202022657.67003-6-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3339c751cb..f692114754 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14960,6 +14960,46 @@ (define-public r-wavcluster
procedures that induce nucleotide substitutions (e.g. BisSeq).")
(license license:gpl2)))
+(define-public r-tilingarray
+ (package
+ (name "r-tilingarray")
+ (version "1.76.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "tilingArray" version))
+ (sha256
+ (base32
+ "19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"))))
+ (properties `((upstream-name . "tilingArray")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affy
+ r-biobase
+ r-genefilter
+ r-pixmap
+ r-rcolorbrewer
+ r-strucchange
+ r-vsn))
+ (home-page "https://bioconductor.org/packages/tilingArray")
+ (synopsis "Transcript mapping with high-density oligonucleotide tiling arrays")
+ (description
+ "The package provides functionality that can be useful for the analysis of
+the high-density tiling microarray data (such as from Affymetrix genechips) or for
+measuring the transcript abundance and the architecture. The main functionalities
+of the package are:
+@enumerate
+@item the class segmentation for representing partitionings of a linear series of
+data;
+@item the function segment for fitting piecewise constant models using a dynamic
+programming algorithm that is both fast and exact;
+@item the function confint for calculating confidence intervals using the strucchange
+package;
+@item the function plotAlongChrom for generating pretty plots;
+@item the function normalizeByReference for probe-sequence dependent response
+adjustment from a (set of) reference hybridizations.
+@end enumerate")
+ (license license:artistic2.0)))
+
(define-public r-timeseriesexperiment
(package
(name "r-timeseriesexperiment")
--
2.39.1
next prev parent reply other threads:[~2023-02-02 2:28 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-02-02 2:23 [bug#61220] [patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2 MadalinIonel.Patrascu
2023-02-02 2:26 ` [bug#61220] [PATCH 01/10] gnu: Add r-glad Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 02/10] gnu: Add r-italicsdata Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 03/10] gnu: Add r-pd-mapping50k-xba240 Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 04/10] gnu: Add r-italics Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 05/10] gnu: Add r-manor Mădălin Ionel Patrașcu
2023-02-02 2:26 ` Mădălin Ionel Patrașcu [this message]
2023-02-02 2:26 ` [bug#61220] [PATCH 07/10] gnu: Add r-snapcgh Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 08/10] gnu: Add r-quantsmooth Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 09/10] gnu: Add r-beadarraysnp Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2 Mădălin Ionel Patrașcu
2023-02-07 9:30 ` Ricardo Wurmus
2023-02-07 9:31 ` bug#61220: [PATCH 01/10] gnu: Add r-glad Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20230202022657.67003-6-madalinionel.patrascu@mdc-berlin.de \
--to=madalinionel.patrascu@mdc-berlin.de \
--cc=61220@debbugs.gnu.org \
--cc=rekado@elephly.net \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.