From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <61220@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#61220] [PATCH 08/10] gnu: Add r-quantsmooth.
Date: Thu, 2 Feb 2023 03:26:55 +0100 [thread overview]
Message-ID: <20230202022657.67003-8-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bce8319dcb..07207ebc38 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8738,6 +8738,33 @@ (define-public r-oligo
Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
(license license:lgpl2.0+)))
+(define-public r-quantsmooth
+ (package
+ (name "r-quantsmooth")
+ (version "1.64.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "quantsmooth" version))
+ (sha256
+ (base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"))))
+ (properties `((upstream-name . "quantsmooth")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-quantreg))
+ (home-page "https://bioconductor.org/packages/quantsmooth")
+ (synopsis "Quantile smoothing and genomic visualization of array data")
+ (description
+ "This package implements quantile smoothing. It contains a dataset used to
+produce human chromosomal ideograms for plotting purposes and a collection of
+arrays that contains data of chromosome 14 of 3 colorectal tumors. The package
+provides functions for painting chromosomal icons, chromosme or chromosomal
+idiogram and other types of plots. Quantsmooth offers options like converting
+chromosomal ids to their numeric form, retrieving the human chromosomal length
+from NCBI data, retrieving regions of interest in a vector of intensities using
+quantile smoothing, determining cytoband position based on the location of the
+probe, and other useful tools.")
+ (license license:gpl2)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
--
2.39.1
next prev parent reply other threads:[~2023-02-02 2:28 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-02-02 2:23 [bug#61220] [patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2 MadalinIonel.Patrascu
2023-02-02 2:26 ` [bug#61220] [PATCH 01/10] gnu: Add r-glad Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 02/10] gnu: Add r-italicsdata Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 03/10] gnu: Add r-pd-mapping50k-xba240 Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 04/10] gnu: Add r-italics Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 05/10] gnu: Add r-manor Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 07/10] gnu: Add r-snapcgh Mădălin Ionel Patrașcu
2023-02-02 2:26 ` Mădălin Ionel Patrașcu [this message]
2023-02-02 2:26 ` [bug#61220] [PATCH 09/10] gnu: Add r-beadarraysnp Mădălin Ionel Patrașcu
2023-02-02 2:26 ` [bug#61220] [PATCH 10/10] gnu: Add r-adacgh2 Mădălin Ionel Patrașcu
2023-02-07 9:30 ` Ricardo Wurmus
2023-02-07 9:31 ` bug#61220: [PATCH 01/10] gnu: Add r-glad Ricardo Wurmus
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