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From: Sarah Morgensen <iskarian@mgsn.dev>
To: Kyle Andrews <kyle.c.andrews@gmail.com>
Cc: 49314@debbugs.gnu.org
Subject: bug#49314: Stan package broken
Date: Thu, 22 Jul 2021 22:25:37 -0700	[thread overview]
Message-ID: <86lf5xr48e.fsf@mgsn.dev> (raw)
In-Reply-To: <878s2q1ef4.fsf@gmail.com> (Kyle Andrews's message of "Thu, 01 Jul 2021 07:06:39 -0400")

Hello,

Thanks for the bug report.

Kyle Andrews <kyle.c.andrews@gmail.com> writes:

[...]

> #+BEGIN_EXAMPLE
> Error in dyn.load(libLFile) : 
>   unable to load shared object '/tmp/Rtmp1AXXXr/file1ffd36a95fa3.so':
>   /gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /tmp/Rtmp1AXXXr/file1ffd36a95fa3.so)

This kind of error typically occurs when something is compiled with a
newer version of GCC/glibc and then linked with an older version. Do you
happen to have a gcc or gcc-toolchain installed in your profile (and
does removing it solve this issue)?

> Error in sink(type = "output") : invalid connection
> #+END_EXAMPLE
>
> I setup my environment with:
>
> : guix environment --ad-hoc r-rstan r-rstanarm r

Alternatively, you could try

  guix environment --pure --ad-hoc r-rstan r-rstanarm r bash coreutils

(Using --pure prevents packages from your profile being used.)

--
Sarah




  reply	other threads:[~2021-07-23  5:26 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-07-01 11:06 bug#49314: Stan package broken Kyle Andrews
2021-07-23  5:25 ` Sarah Morgensen [this message]
2022-07-12 13:14 ` Maxim Cournoyer

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