From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
To: Kyle Andrews <kyle.c.andrews@gmail.com>
Cc: 49314-done@debbugs.gnu.org
Subject: bug#49314: Stan package broken
Date: Tue, 12 Jul 2022 09:14:29 -0400 [thread overview]
Message-ID: <8735f6a2x6.fsf@gmail.com> (raw)
In-Reply-To: <878s2q1ef4.fsf@gmail.com> (Kyle Andrews's message of "Thu, 01 Jul 2021 07:06:39 -0400")
Hi,
Kyle Andrews <kyle.c.andrews@gmail.com> writes:
> Hello,
>
> I tried to run a "Hello World" stan model using the r-rstan package.
>
> #+BEGIN_SRC R
> stancode="data {
> int<lower=0> N;
> vector[N] x;
> vector[N] y;
> }
> parameters {
> real alpha;
> real beta;
> real<lower=0> sigma;
> }
> model {
> y ~ normal(alpha + beta * x, sigma);
> }
> "
> stan_lm = stan(model_code = stancode)
> #+END_SRC
>
>
> Running that code I get the error:
>
> #+BEGIN_EXAMPLE
> Error in dyn.load(libLFile) :
> unable to load shared object '/tmp/Rtmp1AXXXr/file1ffd36a95fa3.so':
> /gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /tmp/Rtmp1AXXXr/file1ffd36a95fa3.so)
> Error in sink(type = "output") : invalid connection
> #+END_EXAMPLE
>
> I setup my environment with:
>
> : guix environment --ad-hoc r-rstan r-rstanarm r
I've tried exercising some of the things shown at
https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started in 'guix
shell r-rstan r-rstanarm r-minimal' and it seems to work. I'm on Guix
commit 17892c5.
Closing.
Thanks for the report!
Maxim
prev parent reply other threads:[~2022-07-12 13:33 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-07-01 11:06 bug#49314: Stan package broken Kyle Andrews
2021-07-23 5:25 ` Sarah Morgensen
2022-07-12 13:14 ` Maxim Cournoyer [this message]
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