From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id EC/NKvFS+mAChgAAgWs5BA (envelope-from ) for ; Fri, 23 Jul 2021 07:26:09 +0200 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id CHhjJvFS+mBJLwAAB5/wlQ (envelope-from ) for ; Fri, 23 Jul 2021 05:26:09 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 4AA8128185 for ; Fri, 23 Jul 2021 07:26:09 +0200 (CEST) Received: from localhost ([::1]:39406 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m6nhI-0003UP-9r for larch@yhetil.org; Fri, 23 Jul 2021 01:26:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37462) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m6nhC-0003UG-9q for bug-guix@gnu.org; Fri, 23 Jul 2021 01:26:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58810) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1m6nhC-0007d1-2Q for bug-guix@gnu.org; Fri, 23 Jul 2021 01:26:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1m6nhB-000186-Rx for bug-guix@gnu.org; Fri, 23 Jul 2021 01:26:01 -0400 X-Loop: help-debbugs@gnu.org Subject: bug#49314: Stan package broken Resent-From: Sarah Morgensen Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Fri, 23 Jul 2021 05:26:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 49314 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: Kyle Andrews Received: via spool by 49314-submit@debbugs.gnu.org id=B49314.16270179484323 (code B ref 49314); Fri, 23 Jul 2021 05:26:01 +0000 Received: (at 49314) by debbugs.gnu.org; 23 Jul 2021 05:25:48 +0000 Received: from localhost ([127.0.0.1]:42123 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m6ngx-00017e-Mf for submit@debbugs.gnu.org; Fri, 23 Jul 2021 01:25:47 -0400 Received: from out0.migadu.com ([94.23.1.103]:62672) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m6ngs-00017Q-0q for 49314@debbugs.gnu.org; Fri, 23 Jul 2021 01:25:46 -0400 X-Report-Abuse: Please report any abuse attempt to abuse@migadu.com and include these headers. DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mgsn.dev; s=key1; t=1627017940; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=pefgMZtWPwQwr/zWJbdg1pmdexa0NdI4jbYYDsTlaZE=; b=NPe52ApQF6VSnFlNX6T4rEq5cXepTC2nI+/RSXY2+ePF/R9CaUSUh72IkeN3KwQtKlT/GD haqopngrdsle0j4pGuLWiuKaRA282HJ9dw2i2gLkBND2UKL9i2BVtXVlLX2tFBB0Z+Nt3g 01CU78hs5SXcWhL4KgbZ+BpvPrDk/Ms= From: Sarah Morgensen References: <878s2q1ef4.fsf@gmail.com> Date: Thu, 22 Jul 2021 22:25:37 -0700 In-Reply-To: <878s2q1ef4.fsf@gmail.com> (Kyle Andrews's message of "Thu, 01 Jul 2021 07:06:39 -0400") Message-ID: <86lf5xr48e.fsf@mgsn.dev> MIME-Version: 1.0 Content-Type: text/plain X-Migadu-Auth-User: iskarian@mgsn.dev X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: 49314@debbugs.gnu.org Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1627017969; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type:resent-cc:resent-from:resent-sender: resent-message-id:in-reply-to:in-reply-to:references:references: list-id:list-help:list-unsubscribe:list-subscribe:list-post: dkim-signature; bh=pefgMZtWPwQwr/zWJbdg1pmdexa0NdI4jbYYDsTlaZE=; b=fEfv/bs5As8iggd7TJzS1yFQBytB0vdLORN1B3JhihpaDE/ujVgjxN1hC+9mqosSStk6jL fzoBfM3hEdVL0N4D74BDZEyeHYL5Mp2ez0FVem5g8h0Y6g0TvYWfUTEY+ISDTgaRUFJOBo /+Vgoyfla2HHJ9Ln8nBtu937nVNQkDR7eYWAygIfWFq2wj8vpgIqjaCpIo1Cd8c0bi5ZVh R6/oEik9tQlU0vYXDoBSGmxlprjpY0riyK2jVMnvwE9FrgeglBJ0pWVnZee80ld7ihkGLE 4AGzUlJRRsC+uey1cQO3puPHyk7K0HqfwTCOm4E8/YCL+vJIkD/BZC50GIVFSA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1627017969; a=rsa-sha256; cv=none; b=Oi60dbwE6lOPve6EAGDPzatMeoLAtyKwFA3x9R1rSGjqSRWHdZBUTQ8lfa6jsy5EFFb5R1 gdehS7PGMtEwfJtlX+D47cb2MOg8SUChtp1k6JFcxhdpedq4b8v+UbJ3jbG06qJ3Up2tFq vUtvdF+0PlKyoDENJ8q6vVI8e9qs7GE9dg+o2ddKXWiv/Ln2RvU1+oreiRWwB1FiXaAYu9 tPVGgc1yjuMC+YS5gOKJZWAZ4wcclIhhk9NhQHSuR5Jow0PCEecO+YyfU0jkvMemu9B9FC 5/BwajhKujQTNrl2Yax3hPM0vJszdurxTvk+CzMqgEhKxs+n4fbYRomWEfDP1A== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mgsn.dev header.s=key1 header.b=NPe52ApQ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mgsn.dev (policy=none); spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Migadu-Spam-Score: -1.32 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mgsn.dev header.s=key1 header.b=NPe52ApQ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mgsn.dev (policy=none); spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Migadu-Queue-Id: 4AA8128185 X-Spam-Score: -1.32 X-Migadu-Scanner: scn0.migadu.com X-TUID: AxQSWvzyOOt0 Hello, Thanks for the bug report. Kyle Andrews writes: [...] > #+BEGIN_EXAMPLE > Error in dyn.load(libLFile) : > unable to load shared object '/tmp/Rtmp1AXXXr/file1ffd36a95fa3.so': > /gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /tmp/Rtmp1AXXXr/file1ffd36a95fa3.so) This kind of error typically occurs when something is compiled with a newer version of GCC/glibc and then linked with an older version. Do you happen to have a gcc or gcc-toolchain installed in your profile (and does removing it solve this issue)? > Error in sink(type = "output") : invalid connection > #+END_EXAMPLE > > I setup my environment with: > > : guix environment --ad-hoc r-rstan r-rstanarm r Alternatively, you could try guix environment --pure --ad-hoc r-rstan r-rstanarm r bash coreutils (Using --pure prevents packages from your profile being used.) -- Sarah