From: zimoun <zimon.toutoune@gmail.com>
To: 54303@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#54303] [PATCH 6/6] gnu: Add r-diffcyt.
Date: Tue, 8 Mar 2022 20:06:17 +0100 [thread overview]
Message-ID: <20220308190617.1011563-6-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20220308190617.1011563-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8fcd43f27f..6c5de0542c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2966,6 +2966,44 @@ (define-public r-dexseq
exploration of the results.")
(license license:gpl3+)))
+(define-public r-diffcyt
+ (package
+ (name "r-diffcyt")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "diffcyt" version))
+ (sha256
+ (base32 "1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"))))
+ (properties `((upstream-name . "diffcyt")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-circlize
+ r-complexheatmap
+ r-dplyr
+ r-edger
+ r-flowcore
+ r-flowsom
+ r-limma
+ r-lme4
+ r-magrittr
+ r-multcomp
+ r-reshape2
+ r-s4vectors
+ r-summarizedexperiment
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/lmweber/diffcyt")
+ (synopsis "Differential discovery in high-dimensional cytometry")
+ (description
+ "Statistical methods for differential discovery analyses in
+high-dimensional cytometry data (including flow cytometry, mass cytometry or
+CyTOF, and oligonucleotide-tagged cytometry), based on a combination of
+high-resolution clustering and empirical Bayes moderated tests adapted from
+transcriptomics.")
+ (license license:expat)))
+
(define-public r-dirichletmultinomial
(package
(name "r-dirichletmultinomial")
--
2.34.0
next prev parent reply other threads:[~2022-03-08 19:07 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-03-08 19:02 [bug#54303] [PATCH 0/6] Some bioinfo R packages zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 1/6] gnu: Add r-scannotatr zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 2/6] gnu: Add r-polychrome zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 3/6] gnu: Add r-babelwhale zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 4/6] gnu: Add r-carrier zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 5/6] gnu: Add r-ga zimoun
2022-03-08 19:06 ` zimoun [this message]
2022-03-15 22:11 ` bug#54303: [PATCH 0/6] Some bioinfo R packages Ricardo Wurmus
2022-03-15 22:37 ` [bug#54303] " zimoun
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