From: zimoun <zimon.toutoune@gmail.com>
To: 54303@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#54303] [PATCH 1/6] gnu: Add r-scannotatr.
Date: Tue, 8 Mar 2022 20:06:12 +0100 [thread overview]
Message-ID: <20220308190617.1011563-1-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20220308190250.1010303-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 534204a16a..8fcd43f27f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4349,6 +4349,43 @@ (define-public r-samr
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-scannotatr
+ (package
+ (name "r-scannotatr")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scAnnotatR" version))
+ (sha256
+ (base32 "08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"))))
+ (properties `((upstream-name . "scAnnotatR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationhub
+ r-ape
+ r-caret
+ r-data-tree
+ r-dplyr
+ r-e1071
+ r-ggplot2
+ r-kernlab
+ r-proc
+ r-rocr
+ r-seurat
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/grisslab/scAnnotatR")
+ (synopsis "Pretrained models for prediction on single cell RNA-sequencing data")
+ (description
+ "This package comprises a set of pretrained machine learning models to
+predict basic immune cell types. This enables to quickly get a first
+annotation of the cell types present in the dataset without requiring prior
+knowledge. The package also allows to train using own models to predict new
+cell types based on specific research needs.")
+ (license license:expat)))
+
(define-public r-scdblfinder
(package
(name "r-scdblfinder")
--
2.34.0
next prev parent reply other threads:[~2022-03-08 19:07 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-03-08 19:02 [bug#54303] [PATCH 0/6] Some bioinfo R packages zimoun
2022-03-08 19:06 ` zimoun [this message]
2022-03-08 19:06 ` [bug#54303] [PATCH 2/6] gnu: Add r-polychrome zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 3/6] gnu: Add r-babelwhale zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 4/6] gnu: Add r-carrier zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 5/6] gnu: Add r-ga zimoun
2022-03-08 19:06 ` [bug#54303] [PATCH 6/6] gnu: Add r-diffcyt zimoun
2022-03-15 22:11 ` bug#54303: [PATCH 0/6] Some bioinfo R packages Ricardo Wurmus
2022-03-15 22:37 ` [bug#54303] " zimoun
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