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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=bPuRGBYd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.58 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=bPuRGBYd; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 5FF54C73D X-Spam-Score: 5.58 X-Migadu-Scanner: scn0.migadu.com X-TUID: /Nusqzd71LdG * gnu/packages/bioconductor.scm (r-diffcyt): New variable. --- gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8fcd43f27f..6c5de0542c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2966,6 +2966,44 @@ (define-public r-dexseq exploration of the results.") (license license:gpl3+))) +(define-public r-diffcyt + (package + (name "r-diffcyt") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "diffcyt" version)) + (sha256 + (base32 "1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni")))) + (properties `((upstream-name . "diffcyt"))) + (build-system r-build-system) + (propagated-inputs + (list r-circlize + r-complexheatmap + r-dplyr + r-edger + r-flowcore + r-flowsom + r-limma + r-lme4 + r-magrittr + r-multcomp + r-reshape2 + r-s4vectors + r-summarizedexperiment + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/lmweber/diffcyt") + (synopsis "Differential discovery in high-dimensional cytometry") + (description + "Statistical methods for differential discovery analyses in +high-dimensional cytometry data (including flow cytometry, mass cytometry or +CyTOF, and oligonucleotide-tagged cytometry), based on a combination of +high-resolution clustering and empirical Bayes moderated tests adapted from +transcriptomics.") + (license license:expat))) + (define-public r-dirichletmultinomial (package (name "r-dirichletmultinomial") -- 2.34.0