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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.58 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=F2B2UMeo; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 78131C3C6 X-Spam-Score: 5.58 X-Migadu-Scanner: scn0.migadu.com X-TUID: igTUd6aNhAm/ * gnu/packages/bioconductor.scm (r-scannotatr): New variable. --- gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 534204a16a..8fcd43f27f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4349,6 +4349,43 @@ (define-public r-samr ;; Any version of the LGPL (license license:lgpl3+))) +(define-public r-scannotatr + (package + (name "r-scannotatr") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scAnnotatR" version)) + (sha256 + (base32 "08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21")))) + (properties `((upstream-name . "scAnnotatR"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationhub + r-ape + r-caret + r-data-tree + r-dplyr + r-e1071 + r-ggplot2 + r-kernlab + r-proc + r-rocr + r-seurat + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/grisslab/scAnnotatR") + (synopsis "Pretrained models for prediction on single cell RNA-sequencing data") + (description + "This package comprises a set of pretrained machine learning models to +predict basic immune cell types. This enables to quickly get a first +annotation of the cell types present in the dataset without requiring prior +knowledge. The package also allows to train using own models to predict new +cell types based on specific research needs.") + (license license:expat))) + (define-public r-scdblfinder (package (name "r-scdblfinder") -- 2.34.0