From: zimoun <zimon.toutoune@gmail.com>
To: 53349@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#53349] [PATCH 9/9] gnu: Add r-scseqcomm.
Date: Tue, 18 Jan 2022 18:54:18 +0100 [thread overview]
Message-ID: <20220118175418.1559782-9-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20220118175418.1559782-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-scseqcomm): New variable.
---
gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b2bd7fbbc0..6e7974e2d7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7893,6 +7893,56 @@ (define-public r-misha
analyze genomic data resulting from various experiments.")
(license license:gpl2)))
+(define-public r-scseqcomm
+ (let ((commit "01076e703999f1a5aa76419d821b50aebe2b777a")
+ (revision "0"))
+ (package
+ (name "r-scseqcomm")
+ (version (git-version "0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.com/sysbiobig/scseqcomm")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1fw5si47d6agnz5fibmp2b1sv08pbpwv1j71w57xbav9044i032q"))
+ ;; Delete bundled dependency.
+ (modules '((guix build utils)))
+ (snippet
+ '(delete-file-recursively "other_deps"))))
+ (build-system r-build-system)
+ (inputs
+ (list r-add2ggplot
+ r-chorddiag
+ r-doparallel
+ r-dplyr
+ r-foreach
+ ;;r-grid ;; listed in DESCRIPTION
+ r-gridextra
+ r-ggplot2
+ r-gtable
+ r-htmlwidgets
+ r-igraph
+ r-matrix
+ ;;r-methods ;; listed in DESCRIPTION
+ r-org-hs-eg-db
+ r-psych
+ r-rcolorbrewer
+ r-rlang
+ r-scico
+ r-tidygraph
+ r-topgo))
+ (native-inputs
+ (list r-knitr))
+ (home-page "https://gitlab.com/sysbiobig/scseqcomm")
+ (synopsis "Inter- and intra- cellular signaling from single cell RNA-seq")
+ (description "This package is tools for analysing intercellular and
+intracellular signaling from single cell RNA-seq (scRNA-seq) data.")
+ (license license:gpl3))))
+
(define-public r-shaman
(let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f")
(release "2.0")
--
2.34.0
next prev parent reply other threads:[~2022-01-18 18:06 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-01-18 17:51 [bug#53349] [PATCH 0/9] Add 2 bioinformatics R packages zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 1/9] gnu: r-org-dr-eg-db: Update to 3.14.0 zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 2/9] gnu: Add r-jetset zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 3/9] gnu: Add r-hgu133plus2-db zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 4/9] gnu: Add r-chorddiag zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 5/9] gnu: Add r-scico zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 6/9] gnu: Add r-add2ggplot zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 7/9] gnu: Add r-rlist zimoun
2022-01-18 17:54 ` [bug#53349] [PATCH 8/9] gnu: Add r-icellnet zimoun
2022-01-18 17:54 ` zimoun [this message]
2022-01-21 13:58 ` bug#53349: [PATCH 0/9] Add 2 bioinformatics R packages Ricardo Wurmus
2022-01-24 14:08 ` [bug#53349] " zimoun
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