From: zimoun <zimon.toutoune@gmail.com>
To: 47010@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47010] [PATCH 04/10] gnu: r-annotationforge: Move to (gnu packages bioconductor).
Date: Mon, 8 Mar 2021 18:57:57 +0100 [thread overview]
Message-ID: <20210308175802.62517-4-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210308175802.62517-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 32 --------------------------------
2 files changed, 32 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 883b6df2fb..706b87b207 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1487,6 +1487,38 @@ structure.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-annotationforge
+ (package
+ (name "r-annotationforge")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationForge" version))
+ (sha256
+ (base32
+ "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7"))))
+ (properties
+ `((upstream-name . "AnnotationForge")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-rcurl" ,r-rcurl)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xml" ,r-xml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/AnnotationForge")
+ (synopsis "Code for building annotation database packages")
+ (description
+ "This package provides code for generating Annotation packages and their
+databases. Packages produced are intended to be used with AnnotationDbi.")
+ (license license:artistic2.0)))
+
(define-public r-deseq2
(package
(name "r-deseq2")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4fa4a1e354..3212641af9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7385,38 +7385,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-annotationforge
- (package
- (name "r-annotationforge")
- (version "1.32.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "AnnotationForge" version))
- (sha256
- (base32
- "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7"))))
- (properties
- `((upstream-name . "AnnotationForge")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-dbi" ,r-dbi)
- ("r-rcurl" ,r-rcurl)
- ("r-rsqlite" ,r-rsqlite)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xml" ,r-xml)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/AnnotationForge")
- (synopsis "Code for building annotation database packages")
- (description
- "This package provides code for generating Annotation packages and their
-databases. Packages produced are intended to be used with AnnotationDbi.")
- (license license:artistic2.0)))
-
(define-public r-rbgl
(package
(name "r-rbgl")
--
2.30.1
next prev parent reply other threads:[~2021-03-08 18:21 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-08 17:55 [bug#47010] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 01/10] gnu: r-genefilter: Move " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 02/10] gnu: r-deseq2: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 03/10] gnu: r-dexseq: " zimoun
2021-03-08 17:57 ` zimoun [this message]
2021-03-08 17:57 ` [bug#47010] [PATCH 05/10] gnu: r-rbgl: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 06/10] gnu: r-gseabase: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 07/10] gnu: r-category: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 08/10] gnu: r-gostats: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 09/10] gnu: r-shortread: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 10/10] gnu: r-systempiper: " zimoun
2021-03-12 13:54 ` bug#47010: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
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