From: zimoun <zimon.toutoune@gmail.com>
To: 47010@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47010] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
Date: Mon, 8 Mar 2021 18:55:58 +0100 [thread overview]
Message-ID: <20210308175558.62461-1-zimon.toutoune@gmail.com> (raw)
Hi,
Janitor [1] patch set. It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor). Far to be complete; still 6
pacth set like this one are coming...
1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
To transfer the Copyright, I use:
git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
Then, after the move, I run:
./pre-inst-env guix build r-<name> --no-grafts
./pre-inst-env guix build r-<name> --no-grafts --check
and at the end of the series, I run:
make as-derivation
to check that "guix pull" is not broken; just in case.
Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.
All the best,
simon
zimoun (10):
gnu: r-genefilter: Move to (gnu packages bioconductor).
gnu: r-deseq2: Move to (gnu packages bioconductor).
gnu: r-dexseq: Move to (gnu packages bioconductor).
gnu: r-annotationforge: Move to (gnu packages bioconductor).
gnu: r-rbgl: Move to (gnu packages bioconductor).
gnu: r-gseabase: Move to (gnu packages bioconductor).
gnu: r-category: Move to (gnu packages bioconductor).
gnu: r-gostats: Move to (gnu packages bioconductor).
gnu: r-shortread: Move to (gnu packages bioconductor).
gnu: r-systempiper: Move to (gnu packages bioconductor).
gnu/packages/bioconductor.scm | 354 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 354 --------------------------------
2 files changed, 354 insertions(+), 354 deletions(-)
base-commit: 612dc6dbe0904f39238a89d3b63ee66abd861b51
--
2.30.1
next reply other threads:[~2021-03-08 18:21 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-08 17:55 zimoun [this message]
2021-03-08 17:57 ` [bug#47010] [PATCH 01/10] gnu: r-genefilter: Move to (gnu packages bioconductor) zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 02/10] gnu: r-deseq2: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 03/10] gnu: r-dexseq: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 04/10] gnu: r-annotationforge: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 05/10] gnu: r-rbgl: " zimoun
2021-03-08 17:57 ` [bug#47010] [PATCH 06/10] gnu: r-gseabase: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 07/10] gnu: r-category: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 08/10] gnu: r-gostats: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 09/10] gnu: r-shortread: " zimoun
2021-03-08 17:58 ` [bug#47010] [PATCH 10/10] gnu: r-systempiper: " zimoun
2021-03-12 13:54 ` bug#47010: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
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