From: Ricardo Wurmus <rekado@elephly.net>
To: 30152@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#30152] [PATCH 1/4] gnu: Add libgff.
Date: Thu, 18 Jan 2018 10:28:27 +0100 [thread overview]
Message-ID: <20180118092830.22110-1-rekado@elephly.net> (raw)
In-Reply-To: <20180118072305.18444-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (libgff): New variable.
---
gnu/packages/bioinformatics.scm | 25 ++++++++++++++++++++++++-
1 file changed, 24 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f0bfa9300..f5e32ffa4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves the key information needed
for quantification, and kallisto is therefore not only fast, but also as
accurate as existing quantification tools.")
(license license:bsd-2)))
+
+(define-public libgff
+ (package
+ (name "libgff")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/Kingsford-Group/"
+ "libgff/archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f)) ; no tests included
+ (home-page "https://github.com/Kingsford-Group/libgff")
+ (synopsis "Parser library for reading/writing GFF files")
+ (description "This is a simple \"libraryfication\" of the GFF/GTF parsing
+code that is used in the Cufflinks codebase. The goal of this library is to
+provide this functionality without the necessity of drawing in a heavy-weight
+dependency like SeqAn.")
+ (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))
--
2.15.0
next prev parent reply other threads:[~2018-01-18 12:08 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-01-18 7:23 [bug#30152] [PATCH 0/4] Add Sailfish and Salmon Ricardo Wurmus
2018-01-18 9:28 ` Ricardo Wurmus [this message]
2018-01-18 9:28 ` [bug#30152] [PATCH 2/4] gnu: Add libdivsufsort Ricardo Wurmus
2018-01-18 9:28 ` [bug#30152] [PATCH 3/4] gnu: Add sailfish Ricardo Wurmus
2018-01-18 9:28 ` [bug#30152] [PATCH 4/4] gnu: Add salmon Ricardo Wurmus
2018-01-21 13:20 ` bug#30152: " Ricardo Wurmus
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