From: Ricardo Wurmus <rekado@elephly.net>
To: 30152@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#30152] [PATCH 0/4] Add Sailfish and Salmon
Date: Thu, 18 Jan 2018 08:23:05 +0100 [thread overview]
Message-ID: <20180118072305.18444-1-rekado@elephly.net> (raw)
Hi Guix,
here are two bioinformatics packages, Sailfish and Salmon, and their
dependencies. The patch for Salmon includes a couple of private packages,
which are modified upstream packages that I unbundled from Salmon.
In previous versions of these patches I also had rapmap-for-sailfish and
rapmap-for-salmon, but since rapmap is not designed to be a shared library I
encountered all sorts of bugs when using Salmon (segfaults). This is why the
rapmap sources are merely unpacked in the expected location; the build system
then takes care of the rest.
Ricardo Wurmus (4):
gnu: Add libgff.
gnu: Add libdivsufsort.
gnu: Add sailfish.
gnu: Add salmon.
gnu/packages/bioinformatics.scm | 463 +++++++++++++++++++++++++++++++++++++++-
1 file changed, 462 insertions(+), 1 deletion(-)
--
2.15.0
next reply other threads:[~2018-01-18 8:10 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-01-18 7:23 Ricardo Wurmus [this message]
2018-01-18 9:28 ` [bug#30152] [PATCH 1/4] gnu: Add libgff Ricardo Wurmus
2018-01-18 9:28 ` [bug#30152] [PATCH 2/4] gnu: Add libdivsufsort Ricardo Wurmus
2018-01-18 9:28 ` [bug#30152] [PATCH 3/4] gnu: Add sailfish Ricardo Wurmus
2018-01-18 9:28 ` [bug#30152] [PATCH 4/4] gnu: Add salmon Ricardo Wurmus
2018-01-21 13:20 ` bug#30152: " Ricardo Wurmus
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