all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
From: Ricardo Wurmus <rekado@elephly.net>
To: 30152@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#30152] [PATCH 0/4] Add Sailfish and Salmon
Date: Thu, 18 Jan 2018 08:23:05 +0100	[thread overview]
Message-ID: <20180118072305.18444-1-rekado@elephly.net> (raw)

Hi Guix,

here are two bioinformatics packages, Sailfish and Salmon, and their
dependencies.  The patch for Salmon includes a couple of private packages,
which are modified upstream packages that I unbundled from Salmon.

In previous versions of these patches I also had rapmap-for-sailfish and
rapmap-for-salmon, but since rapmap is not designed to be a shared library I
encountered all sorts of bugs when using Salmon (segfaults).  This is why the
rapmap sources are merely unpacked in the expected location; the build system
then takes care of the rest.

Ricardo Wurmus (4):
  gnu: Add libgff.
  gnu: Add libdivsufsort.
  gnu: Add sailfish.
  gnu: Add salmon.

 gnu/packages/bioinformatics.scm | 463 +++++++++++++++++++++++++++++++++++++++-
 1 file changed, 462 insertions(+), 1 deletion(-)

-- 
2.15.0

             reply	other threads:[~2018-01-18  8:10 UTC|newest]

Thread overview: 6+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2018-01-18  7:23 Ricardo Wurmus [this message]
2018-01-18  9:28 ` [bug#30152] [PATCH 1/4] gnu: Add libgff Ricardo Wurmus
2018-01-18  9:28   ` [bug#30152] [PATCH 2/4] gnu: Add libdivsufsort Ricardo Wurmus
2018-01-18  9:28   ` [bug#30152] [PATCH 3/4] gnu: Add sailfish Ricardo Wurmus
2018-01-18  9:28   ` [bug#30152] [PATCH 4/4] gnu: Add salmon Ricardo Wurmus
2018-01-21 13:20     ` bug#30152: " Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20180118072305.18444-1-rekado@elephly.net \
    --to=rekado@elephly.net \
    --cc=30152@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.