From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:58956) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ec8zG-0003QE-B8 for guix-patches@gnu.org; Thu, 18 Jan 2018 07:08:12 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ec8zD-0003ZE-UB for guix-patches@gnu.org; Thu, 18 Jan 2018 07:08:06 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:53132) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1ec8zD-0003Z7-QB for guix-patches@gnu.org; Thu, 18 Jan 2018 07:08:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ec8zD-000642-Kg for guix-patches@gnu.org; Thu, 18 Jan 2018 07:08:03 -0500 Subject: [bug#30152] [PATCH 1/4] gnu: Add libgff. References: <20180118072305.18444-1-rekado@elephly.net> In-Reply-To: <20180118072305.18444-1-rekado@elephly.net> Resent-Message-ID: From: Ricardo Wurmus Date: Thu, 18 Jan 2018 10:28:27 +0100 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Message-ID: <20180118092830.22110-1-rekado@elephly.net> List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 30152@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (libgff): New variable. --- gnu/packages/bioinformatics.scm | 25 ++++++++++++++++++++++++- 1 file changed, 24 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.= scm index f0bfa9300..f5e32ffa4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright =C2=A9 2014, 2015, 2016, 2017 Ricardo Wurmus +;;; Copyright =C2=A9 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus ;;; Copyright =C2=A9 2015, 2016, 2017 Ben Woodcroft ;;; Copyright =C2=A9 2015, 2016 Pjotr Prins ;;; Copyright =C2=A9 2015 Andreas Enge @@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves= the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate as existing quantification tools.") (license license:bsd-2))) + +(define-public libgff + (package + (name "libgff") + (version "1.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/Kingsford-Group/" + "libgff/archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls")))) + (build-system cmake-build-system) + (arguments `(#:tests? #f)) ; no tests included + (home-page "https://github.com/Kingsford-Group/libgff") + (synopsis "Parser library for reading/writing GFF files") + (description "This is a simple \"libraryfication\" of the GFF/GTF pars= ing +code that is used in the Cufflinks codebase. The goal of this library is = to +provide this functionality without the necessity of drawing in a heavy-wei= ght +dependency like SeqAn.") + (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt")))) --=20 2.15.0