From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:50266) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ec5Gx-0005fm-HN for guix-patches@gnu.org; Thu, 18 Jan 2018 03:10:08 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ec5Gs-0005Bm-FX for guix-patches@gnu.org; Thu, 18 Jan 2018 03:10:07 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:52996) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1ec5Gs-0005Bi-Bt for guix-patches@gnu.org; Thu, 18 Jan 2018 03:10:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ec5Gs-0006b9-3O for guix-patches@gnu.org; Thu, 18 Jan 2018 03:10:02 -0500 Subject: [bug#30152] [PATCH 0/4] Add Sailfish and Salmon Resent-Message-ID: Received: from eggs.gnu.org ([2001:4830:134:3::10]:50098) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ec5GF-0005YO-Fo for guix-patches@gnu.org; Thu, 18 Jan 2018 03:09:25 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ec5GA-0004oo-Dh for guix-patches@gnu.org; Thu, 18 Jan 2018 03:09:23 -0500 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21051) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1ec5GA-0004h0-5S for guix-patches@gnu.org; Thu, 18 Jan 2018 03:09:18 -0500 From: Ricardo Wurmus Date: Thu, 18 Jan 2018 08:23:05 +0100 Message-Id: <20180118072305.18444-1-rekado@elephly.net> List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 30152@debbugs.gnu.org Cc: Ricardo Wurmus Hi Guix, here are two bioinformatics packages, Sailfish and Salmon, and their dependencies. The patch for Salmon includes a couple of private packages, which are modified upstream packages that I unbundled from Salmon. In previous versions of these patches I also had rapmap-for-sailfish and rapmap-for-salmon, but since rapmap is not designed to be a shared library I encountered all sorts of bugs when using Salmon (segfaults). This is why the rapmap sources are merely unpacked in the expected location; the build system then takes care of the rest. Ricardo Wurmus (4): gnu: Add libgff. gnu: Add libdivsufsort. gnu: Add sailfish. gnu: Add salmon. gnu/packages/bioinformatics.scm | 463 +++++++++++++++++++++++++++++++++++++++- 1 file changed, 462 insertions(+), 1 deletion(-) -- 2.15.0