* [bug#38489] [PATCH] gnu: Add r-qtl2.
@ 2019-12-04 8:57 Efraim Flashner
2019-12-06 18:14 ` zimoun
0 siblings, 1 reply; 3+ messages in thread
From: Efraim Flashner @ 2019-12-04 8:57 UTC (permalink / raw)
To: 38489; +Cc: Efraim Flashner
* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0d070b4e7..522cde959e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL,
two-dimensional genome scans.")
(license license:gpl3)))
+(define-public r-qtl2
+ (package
+ (name "r-qtl2")
+ (version "0.20")
+ (source (origin
+ (method git-fetch)
+ ;; Not yet available in cran.
+ (uri (git-reference
+ (url "https://github.com/rqtl/qtl2.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://kbroman.org/qtl2/")
+ (synopsis
+ "QTL analysis software for high-dimensional data and complex cross designs")
+ (description
+ "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
+R/qtl, to better handle high-dimensional data and complex cross designs.")
+ (license license:gpl3)))
+
(define-public r-zlibbioc
(package
(name "r-zlibbioc")
--
2.24.0
^ permalink raw reply related [flat|nested] 3+ messages in thread* [bug#38489] [PATCH] gnu: Add r-qtl2.
2019-12-04 8:57 [bug#38489] [PATCH] gnu: Add r-qtl2 Efraim Flashner
@ 2019-12-06 18:14 ` zimoun
2019-12-10 11:12 ` bug#38489: " Efraim Flashner
0 siblings, 1 reply; 3+ messages in thread
From: zimoun @ 2019-12-06 18:14 UTC (permalink / raw)
To: Efraim Flashner; +Cc: 38489
Hi Efraim,
On Wed, 4 Dec 2019 at 10:03, Efraim Flashner <efraim@flashner.co.il> wrote:
>
> * gnu/packages/bioinformatics.scm (r-qtl2): New variable.
> ---
> gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
> 1 file changed, 29 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index b0d070b4e7..522cde959e 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL,
> two-dimensional genome scans.")
> (license license:gpl3)))
>
> +(define-public r-qtl2
> + (package
> + (name "r-qtl2")
> + (version "0.20")
> + (source (origin
> + (method git-fetch)
> + ;; Not yet available in cran.
> + (uri (git-reference
> + (url "https://github.com/rqtl/qtl2.git")
> + (commit version)))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
> + (build-system r-build-system)
> + (propagated-inputs
> + `(("r-data-table" ,r-data-table)
> + ("r-jsonlite" ,r-jsonlite)
> + ("r-rcpp" ,r-rcpp)
> + ("r-rcppeigen" ,r-rcppeigen)
> + ("r-rsqlite" ,r-rsqlite)
> + ("r-yaml" ,r-yaml)))
> + (home-page "https://kbroman.org/qtl2/")
> + (synopsis
> + "QTL analysis software for high-dimensional data and complex cross designs")
> + (description
> + "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
> +R/qtl, to better handle high-dimensional data and complex cross designs.")
> + (license license:gpl3)))
> +
LGTM.
All the best,
simon
^ permalink raw reply [flat|nested] 3+ messages in thread
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2019-12-04 8:57 [bug#38489] [PATCH] gnu: Add r-qtl2 Efraim Flashner
2019-12-06 18:14 ` zimoun
2019-12-10 11:12 ` bug#38489: " Efraim Flashner
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