From: zimoun <zimon.toutoune@gmail.com>
To: Efraim Flashner <efraim@flashner.co.il>
Cc: 38489@debbugs.gnu.org
Subject: [bug#38489] [PATCH] gnu: Add r-qtl2.
Date: Fri, 6 Dec 2019 19:14:20 +0100 [thread overview]
Message-ID: <CAJ3okZ3VKYi6e5fdWCF3gan4DTH9zApfMOG=c1tc1Ki9k8++Ng@mail.gmail.com> (raw)
In-Reply-To: <20191204085735.23318-1-efraim@flashner.co.il>
Hi Efraim,
On Wed, 4 Dec 2019 at 10:03, Efraim Flashner <efraim@flashner.co.il> wrote:
>
> * gnu/packages/bioinformatics.scm (r-qtl2): New variable.
> ---
> gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
> 1 file changed, 29 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index b0d070b4e7..522cde959e 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL,
> two-dimensional genome scans.")
> (license license:gpl3)))
>
> +(define-public r-qtl2
> + (package
> + (name "r-qtl2")
> + (version "0.20")
> + (source (origin
> + (method git-fetch)
> + ;; Not yet available in cran.
> + (uri (git-reference
> + (url "https://github.com/rqtl/qtl2.git")
> + (commit version)))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
> + (build-system r-build-system)
> + (propagated-inputs
> + `(("r-data-table" ,r-data-table)
> + ("r-jsonlite" ,r-jsonlite)
> + ("r-rcpp" ,r-rcpp)
> + ("r-rcppeigen" ,r-rcppeigen)
> + ("r-rsqlite" ,r-rsqlite)
> + ("r-yaml" ,r-yaml)))
> + (home-page "https://kbroman.org/qtl2/")
> + (synopsis
> + "QTL analysis software for high-dimensional data and complex cross designs")
> + (description
> + "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
> +R/qtl, to better handle high-dimensional data and complex cross designs.")
> + (license license:gpl3)))
> +
LGTM.
All the best,
simon
next prev parent reply other threads:[~2019-12-06 18:15 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-12-04 8:57 [bug#38489] [PATCH] gnu: Add r-qtl2 Efraim Flashner
2019-12-06 18:14 ` zimoun [this message]
2019-12-10 11:12 ` bug#38489: " Efraim Flashner
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to='CAJ3okZ3VKYi6e5fdWCF3gan4DTH9zApfMOG=c1tc1Ki9k8++Ng@mail.gmail.com' \
--to=zimon.toutoune@gmail.com \
--cc=38489@debbugs.gnu.org \
--cc=efraim@flashner.co.il \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).