From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:46566) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1icQV7-0003RT-JA for guix-patches@gnu.org; Wed, 04 Dec 2019 03:59:17 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1icQUy-0007Vw-Dq for guix-patches@gnu.org; Wed, 04 Dec 2019 03:59:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:35452) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1icQUy-0007Qy-98 for guix-patches@gnu.org; Wed, 04 Dec 2019 03:59:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1icQUw-0000Ad-6k for guix-patches@gnu.org; Wed, 04 Dec 2019 03:59:02 -0500 Subject: [bug#38489] [PATCH] gnu: Add r-qtl2. Resent-Message-ID: Received: from eggs.gnu.org ([2001:470:142:3::10]:45640) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1icQUi-0003Ff-Ob for guix-patches@gnu.org; Wed, 04 Dec 2019 03:58:50 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1icQUb-0006Fq-HJ for guix-patches@gnu.org; Wed, 04 Dec 2019 03:58:44 -0500 Received: from flashner.co.il ([178.62.234.194]:51030) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1icQUb-0004dO-AW for guix-patches@gnu.org; Wed, 04 Dec 2019 03:58:41 -0500 From: Efraim Flashner Date: Wed, 4 Dec 2019 10:57:35 +0200 Message-Id: <20191204085735.23318-1-efraim@flashner.co.il> MIME-Version: 1.0 Content-Transfer-Encoding: quoted-printable List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 38489@debbugs.gnu.org Cc: Efraim Flashner * gnu/packages/bioinformatics.scm (r-qtl2): New variable. --- gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatic= s.scm index b0d070b4e7..522cde959e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-= QTL and two-QTL, two-dimensional genome scans.") (license license:gpl3))) =20 +(define-public r-qtl2 + (package + (name "r-qtl2") + (version "0.20") + (source (origin + (method git-fetch) + ;; Not yet available in cran. + (uri (git-reference + (url "https://github.com/rqtl/qtl2.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0")))= ) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rsqlite" ,r-rsqlite) + ("r-yaml" ,r-yaml))) + (home-page "https://kbroman.org/qtl2/") + (synopsis + "QTL analysis software for high-dimensional data and complex cross = designs") + (description + "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis softwa= re +R/qtl, to better handle high-dimensional data and complex cross designs.= ") + (license license:gpl3))) + (define-public r-zlibbioc (package (name "r-zlibbioc") --=20 2.24.0