* [bug#47490] [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene
@ 2021-03-29 23:00 Hong.Li
2021-04-12 16:37 ` bug#47490: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Hong.Li @ 2021-03-29 23:00 UTC (permalink / raw)
To: 47490; +Cc: Ricardo.Wurmus@mdc-berlin.de
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From 2621d8b89a4406bce271436640b8b7fd7764b8c0 Mon Sep 17 00:00:00 2001
From: hli <hli@mdc-berlin.de>
Date: Tue, 30 Mar 2021 00:53:51 +0200
Subject: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0bcd9a67cd..a8601d7ed2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -619,6 +619,36 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
"This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0)))
+(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
+ (package
+ (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri
+ "TxDb.Dmelanogaster.UCSC.dm6.ensGene"
+ version
+ 'annotation))
+ (sha256
+ (base32
+ "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"))))
+ (properties
+ `((upstream-name
+ .
+ "TxDb.Dmelanogaster.UCSC.dm6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page
+ "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene")
+ (synopsis
+ "Annotation package for TxDb object(s)")
+ (description
+ "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects")
+ (license license:artistic2.0)))
+
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
--
2.17.1
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^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#47490: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene
2021-03-29 23:00 [bug#47490] [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene Hong.Li
@ 2021-04-12 16:37 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2021-04-12 16:37 UTC (permalink / raw)
To: Li, Hong; +Cc: 47490-done
Li, Hong <Hong.Li@mdc-berlin.de> writes:
> From 2621d8b89a4406bce271436640b8b7fd7764b8c0 Mon Sep 17 00:00:00 2001
> From: hli <hli@mdc-berlin.de>
> Date: Tue, 30 Mar 2021 00:53:51 +0200
> Subject: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene
Thank you, I pushed it with minor tweaks and a conventional commit
message with commit eb8da54170919bc31946f492da1071dd491e942a.
PS: you can generate a commit (or a series of commits) with the expected
commit message by running ./etc/committer.scm.
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2021-03-29 23:00 [bug#47490] [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene Hong.Li
2021-04-12 16:37 ` bug#47490: " Ricardo Wurmus
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