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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="N Q1pk0o"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: 1.18 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="N Q1pk0o"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 5B64AF931 X-Spam-Score: 1.18 X-Migadu-Scanner: scn0.migadu.com X-TUID: 7uFU3ljjTXz1 --_000_a1d3b10baf29429fa1bf647a3445cef1mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable >From 2621d8b89a4406bce271436640b8b7fd7764b8c0 Mon Sep 17 00:00:00 2001 From: hli Date: Tue, 30 Mar 2021 00:53:51 +0200 Subject: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0bcd9a67cd..a8601d7ed2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -619,6 +619,36 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Bi= ostrings objects.") "This package exposes an annotation database generated from Ensembl."= ) (license license:artistic2.0))) +(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene + (package + (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri + "TxDb.Dmelanogaster.UCSC.dm6.ensGene" + version + 'annotation)) + (sha256 + (base32 + "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4")))) + (properties + `((upstream-name + . + "TxDb.Dmelanogaster.UCSC.dm6.ensGene"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-genomicfeatures" ,r-genomicfeatures))) + (home-page + "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGen= e") + (synopsis + "Annotation package for TxDb object(s)") + (description + "Exposes an annotation databases generated from UCSC by exposing thes= e as TxDb objects") + (license license:artistic2.0))) + (define-public r-txdb-hsapiens-ucsc-hg19-knowngene (package (name "r-txdb-hsapiens-ucsc-hg19-knowngene") -- 2.17.1 --_000_a1d3b10baf29429fa1bf647a3445cef1mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable
From 2621d8b89a4406bce271436640b8b7fd7764b8c0 Mon Sep 17 00:00:00 2001=
From: hli <hli@mdc-berlin.de>
Date: Tue, 30 Mar 2021 00:53:51 +0200
Subject: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene

---
 gnu/packages/bioconductor.scm | 30 +++++++= ;+++++++++++++++= ;++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm<= br> index 0bcd9a67cd..a8601d7ed2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -619,6 +619,36 @@ as provided by UCSC (hg38, Dec. 2013) and stored i= n Biostrings objects.")
      "This package exposes an annotation dat= abase generated from Ensembl.")
     (license license:artistic2.0)))

+(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
+  (package
+    (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene&q= uot;)
+    (version "3.12.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri
+           &nbs= p; "TxDb.Dmelanogaster.UCSC.dm6.ensGene"
+           &nbs= p; version
+           &nbs= p; 'annotation))
+       (sha256
+        (base32
+         "0yij7zyqkmmr133= 89rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"))))
+    (properties
+     `((upstream-name
+        .
+        "TxDb.Dmelanogaster.UC= SC.dm6.ensGene")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationd= bi)
+       ("r-genomicfeatures" ,r= -genomicfeatures)))
+    (home-page
+     "https://bioconductor.org/packages/TxDb.= Dmelanogaster.UCSC.dm6.ensGene")
+    (synopsis
+     "Annotation package for TxDb object(s)&q= uot;)
+    (description
+     "Exposes an annotation databases generat= ed from UCSC by exposing these as TxDb objects")
+    (license license:artistic2.0)))
+
 (define-public r-txdb-hsapiens-ucsc-hg19-knowngene
   (package
     (name "r-txdb-hsapiens-ucsc-hg19-knowngene&qu= ot;)
--
2.17.1
--_000_a1d3b10baf29429fa1bf647a3445cef1mdcberlinde_--