From 2621d8b89a4406bce271436640b8b7fd7764b8c0 Mon Sep 17 00:00:00 2001
From: hli <hli@mdc-berlin.de>
Date: Tue, 30 Mar 2021 00:53:51 +0200
Subject: [PATCH] r-txdb-dmelanogaster-ucsc-dm6-ensgene
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0bcd9a67cd..a8601d7ed2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -619,6 +619,36 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
"This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0)))
+(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
+ (package
+ (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri
+ "TxDb.Dmelanogaster.UCSC.dm6.ensGene"
+ version
+ 'annotation))
+ (sha256
+ (base32
+ "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"))))
+ (properties
+ `((upstream-name
+ .
+ "TxDb.Dmelanogaster.UCSC.dm6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page
+ "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene")
+ (synopsis
+ "Annotation package for TxDb object(s)")
+ (description
+ "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects")
+ (license license:artistic2.0)))
+
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
--
2.17.1