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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62428@debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout.
Date: Sat, 25 Mar 2023 00:18:55 +0100	[thread overview]
Message-ID: <20230324231900.28367-9-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-arraymvout): New variable.
---
 gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9f43c42bee..62cd786842 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3215,6 +3215,42 @@ (define-public r-arrayexpress
 structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
     (license license:artistic2.0)))
 
+(define-public r-arraymvout
+  (package
+    (name "r-arraymvout")
+    (version "1.56.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "arrayMvout" version))
+       (sha256
+        (base32 "0g66s64n4qlvhkanp33bbvpi93rsdx5xq0mjr96d0195qbf6k156"))))
+    (properties `((upstream-name . "arrayMvout")))
+    (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+         (add-before 'install 'change-home-dir
+           (lambda _
+             ;; Change from /homeless-shelter to /tmp for write permission.
+             (setenv "HOME" "/tmp"))))))
+    (propagated-inputs
+     (list r-affy
+           r-affycontam
+           r-biobase
+           r-lumi
+           r-mdqc
+           r-parody))
+    (home-page "https://bioconductor.org/packages/arrayMvout")
+    (synopsis "Multivariate outlier detection for expression array QA")
+    (description
+     "This package supports the application of diverse quality metrics to AffyBatch
+instances, summarizing these metrics via PCA, and then performing parametric
+outlier detection on the PCs to identify aberrant arrays with a fixed Type I
+error rate.")
+    (license license:artistic2.0)))
+
 (define-public r-asafe
   (package
     (name "r-asafe")
-- 
2.39.2





  parent reply	other threads:[~2023-03-24 23:21 UTC|newest]

Thread overview: 16+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-03-24 22:25 [bug#62428] gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 01/14] gnu: Add r-anota2seq Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 02/14] gnu: Add r-repmis Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 05/14] gnu: Add r-org-sc-sgd-db Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 07/14] gnu: Add r-mdqc Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 08/14] gnu: Add r-parody Mădălin Ionel Patrașcu
2023-03-24 23:18   ` Mădălin Ionel Patrașcu [this message]
2023-03-24 23:18   ` [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 11/14] gnu: Add r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr Mădălin Ionel Patrașcu
2023-03-24 23:18   ` [bug#62428] [PATCH 13/14] gnu: Add r-beadarray Mădălin Ionel Patrașcu
2023-03-24 23:19   ` [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics Mădălin Ionel Patrașcu
2023-10-04  9:06 ` bug#62428: gnu: Add r-anota2seq … Ricardo Wurmus

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