From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62428@debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest.
Date: Sat, 25 Mar 2023 00:18:49 +0100 [thread overview]
Message-ID: <20230324231900.28367-3-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 37b649a7d6..c58613bea3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16248,6 +16248,36 @@ (define-public r-rsbml
validating output, provides an S4 SBML DOM, converts SBML to R graph objects.")
(license license:artistic2.0)))
+(define-public r-hybridmtest
+ (package
+ (name "r-hybridmtest")
+ (version "1.42.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HybridMTest" version))
+ (sha256
+ (base32 "0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"))))
+ (properties `((upstream-name . "HybridMTest")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-fdrtool
+ r-mass
+ r-survival))
+ (home-page "https://bioconductor.org/packages/HybridMTest")
+ (synopsis "Hybrid multiple testing")
+ (description
+ "This package performs hybrid multiple testing that incorporates method
+selection and assumption evaluations into the analysis using @acronym{EBP,
+empirical Bayes probability} estimates obtained by Grenander density estimation.
+For instance, for 3-group comparison analysis, Hybrid Multiple testing considers
+EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test
+of normality as weigth. Instead of just using EBPs from F-test only or using H-
+test only, this methodology combines both types of EBPs through EBPs from Shapiro
+Wilk test of normality. This methodology uses then the law of total EBPs.")
+ (license license:gpl2+)))
+
(define-public r-hypergraph
(package
(name "r-hypergraph")
--
2.39.2
next prev parent reply other threads:[~2023-03-24 23:21 UTC|newest]
Thread overview: 16+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-24 22:25 [bug#62428] gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 01/14] gnu: Add r-anota2seq Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 02/14] gnu: Add r-repmis Mădălin Ionel Patrașcu
2023-03-24 23:18 ` Mădălin Ionel Patrașcu [this message]
2023-03-24 23:18 ` [bug#62428] Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 05/14] gnu: Add r-org-sc-sgd-db Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 07/14] gnu: Add r-mdqc Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 08/14] gnu: Add r-parody Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 11/14] gnu: Add r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 13/14] gnu: Add r-beadarray Mădălin Ionel Patrașcu
2023-03-24 23:19 ` [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics Mădălin Ionel Patrașcu
2023-10-04 9:06 ` bug#62428: gnu: Add r-anota2seq … Ricardo Wurmus
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