From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <62428@debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 07/14] gnu: Add r-mdqc.
Date: Sat, 25 Mar 2023 00:18:53 +0100 [thread overview]
Message-ID: <20230324231900.28367-7-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-mdqc): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71d65d64a5..39367dd927 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6968,6 +6968,31 @@ (define-public r-maser
and visualizaton of alternative splicing events generated by rMATS.")
(license license:expat)))
+(define-public r-mdqc
+ (package
+ (name "r-mdqc")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mdqc" version))
+ (sha256
+ (base32 "1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"))))
+ (properties `((upstream-name . "mdqc")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-cluster
+ r-mass))
+ (home-page "https://bioconductor.org/packages/mdqc")
+ (synopsis "Mahalanobis distance quality control for microarrays")
+ (description
+ "MDQC is a multivariate quality assessment method for microarrays based on
+quality control (QC) reports. The Mahalanobis distance of an array's quality
+attributes is used to measure the similarity of the quality of that array
+against the quality of the other arrays. Then, arrays with unusually high
+distances can be flagged as potentially low-quality.")
+ (license license:lgpl2.0+)))
+
(define-public r-metagenomeseq
(package
(name "r-metagenomeseq")
--
2.39.2
next prev parent reply other threads:[~2023-03-24 23:21 UTC|newest]
Thread overview: 16+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-24 22:25 [bug#62428] gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 01/14] gnu: Add r-anota2seq Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 02/14] gnu: Add r-repmis Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 05/14] gnu: Add r-org-sc-sgd-db Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex Mădălin Ionel Patrașcu
2023-03-24 23:18 ` Mădălin Ionel Patrașcu [this message]
2023-03-24 23:18 ` [bug#62428] [PATCH 08/14] gnu: Add r-parody Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 11/14] gnu: Add r-setrng Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr Mădălin Ionel Patrașcu
2023-03-24 23:18 ` [bug#62428] [PATCH 13/14] gnu: Add r-beadarray Mădălin Ionel Patrașcu
2023-03-24 23:19 ` [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics Mădălin Ionel Patrașcu
2023-10-04 9:06 ` bug#62428: gnu: Add r-anota2seq … Ricardo Wurmus
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