* [bug#61230] [PATCH 1/2] gnu: Add python-pegasusio.
@ 2023-02-02 16:00 Navid Afkhami
2023-02-02 16:00 ` [bug#61229] [PATCH 2/2] gnu: Add python-demuxem Navid Afkhami
2023-02-02 23:25 ` bug#61230: [PATCH 1/2] gnu: Add python-pegasusio Ricardo Wurmus
0 siblings, 2 replies; 4+ messages in thread
From: Navid Afkhami @ 2023-02-02 16:00 UTC (permalink / raw)
To: 61230
* gnu/packages/bioinformatics.scm (python-pegasusio): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 714db27c16..6caf0e4cfa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1136,6 +1136,36 @@ (define-public python-htsget
servers supporting the protocol.")
(license license:asl2.0)))
+(define-public python-pegasusio
+ (package
+ (name "python-pegasusio")
+ (version "0.7.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pegasusio" version))
+ (sha256
+ (base32
+ "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-anndata
+ python-docopt
+ python-h5py
+ python-importlib-metadata
+ python-loompy
+ python-natsort
+ python-numpy
+ python-pandas
+ python-pillow
+ python-scipy
+ python-zarr))
+ (native-inputs (list python-cython python-setuptools-scm))
+ (home-page "https://github.com/lilab-bcb/pegasusio")
+ (synopsis
+ "Pegasusio is a Python package for reading or writing single-cell genomics data")
+ (description
+ "Pegasusio is a Python package for reading or writing single-cell genomics data.")
+ (license license:bsd-3)))
+
(define-public python-phylophlan
(package
(name "python-phylophlan")
--
2.34.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#61229] [PATCH 2/2] gnu: Add python-demuxem.
2023-02-02 16:00 [bug#61230] [PATCH 1/2] gnu: Add python-pegasusio Navid Afkhami
@ 2023-02-02 16:00 ` Navid Afkhami
2023-02-02 23:25 ` bug#61229: " Ricardo Wurmus
2023-02-02 23:25 ` bug#61230: [PATCH 1/2] gnu: Add python-pegasusio Ricardo Wurmus
1 sibling, 1 reply; 4+ messages in thread
From: Navid Afkhami @ 2023-02-02 16:00 UTC (permalink / raw)
To: 61229
* gnu/packages/bioinformatics.scm (python-demuxem): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6caf0e4cfa..406f8616c7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1090,6 +1090,35 @@ (define-public python-cmseq
and sequence consensus.")
(license license:expat)))
+(define-public python-demuxem
+ (package
+ (name "python-demuxem")
+ (version "0.1.7")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "demuxEM" version))
+ (sha256
+ (base32
+ "1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-docopt
+ python-importlib-metadata
+ python-numpy
+ python-pandas
+ python-pegasusio
+ python-scikit-learn
+ python-scipy
+ python-seaborn))
+ (native-inputs (list python-cython python-setuptools-scm))
+ (home-page "https://github.com/lilab-bcb/demuxEM")
+ (synopsis
+ "This is a module on analyzing cell-hashing/nucleus-hashing data")
+ (description
+ "This is a module on analyzing cell-hashing/nucleus-hashing data.
+It is the demultiplexing module of Pegasus, which is used by Cumulus
+in demultiplexing step.")
+ (license license:bsd-3)))
+
(define-public python-hclust2
(package
(name "python-hclust2")
--
2.34.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* bug#61229: [PATCH 2/2] gnu: Add python-demuxem.
2023-02-02 16:00 ` [bug#61229] [PATCH 2/2] gnu: Add python-demuxem Navid Afkhami
@ 2023-02-02 23:25 ` Ricardo Wurmus
0 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2023-02-02 23:25 UTC (permalink / raw)
To: 61229-done
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 4+ messages in thread
* bug#61230: [PATCH 1/2] gnu: Add python-pegasusio.
2023-02-02 16:00 [bug#61230] [PATCH 1/2] gnu: Add python-pegasusio Navid Afkhami
2023-02-02 16:00 ` [bug#61229] [PATCH 2/2] gnu: Add python-demuxem Navid Afkhami
@ 2023-02-02 23:25 ` Ricardo Wurmus
1 sibling, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2023-02-02 23:25 UTC (permalink / raw)
To: 61230-done
Applied, thank you!
--
Ricardo
^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2023-02-02 23:27 UTC | newest]
Thread overview: 4+ messages (download: mbox.gz / follow: Atom feed)
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2023-02-02 16:00 [bug#61230] [PATCH 1/2] gnu: Add python-pegasusio Navid Afkhami
2023-02-02 16:00 ` [bug#61229] [PATCH 2/2] gnu: Add python-demuxem Navid Afkhami
2023-02-02 23:25 ` bug#61229: " Ricardo Wurmus
2023-02-02 23:25 ` bug#61230: [PATCH 1/2] gnu: Add python-pegasusio Ricardo Wurmus
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