unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 61229@debbugs.gnu.org
Subject: [bug#61229] [PATCH 2/2] gnu: Add python-demuxem.
Date: Thu, 2 Feb 2023 17:00:23 +0100	[thread overview]
Message-ID: <20230202160023.45975-2-navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <20230202160023.45975-1-navid.afkhami@mdc-berlin.de>

* gnu/packages/bioinformatics.scm (python-demuxem): New variable.
---
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6caf0e4cfa..406f8616c7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1090,6 +1090,35 @@ (define-public python-cmseq
 and sequence consensus.")
     (license license:expat)))
 
+(define-public python-demuxem
+  (package
+    (name "python-demuxem")
+    (version "0.1.7")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "demuxEM" version))
+              (sha256
+               (base32
+                "1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs (list python-docopt
+                             python-importlib-metadata
+                             python-numpy
+                             python-pandas
+                             python-pegasusio
+                             python-scikit-learn
+                             python-scipy
+                             python-seaborn))
+    (native-inputs (list python-cython python-setuptools-scm))
+    (home-page "https://github.com/lilab-bcb/demuxEM")
+    (synopsis
+     "This is a module on analyzing cell-hashing/nucleus-hashing data")
+    (description
+     "This is a module on analyzing cell-hashing/nucleus-hashing data.
+It is the demultiplexing module of Pegasus, which is used by Cumulus
+in demultiplexing step.")
+    (license license:bsd-3)))
+
 (define-public python-hclust2
   (package
     (name "python-hclust2")
-- 
2.34.1





  reply	other threads:[~2023-02-02 16:01 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-02-02 16:00 [bug#61230] [PATCH 1/2] gnu: Add python-pegasusio Navid Afkhami
2023-02-02 16:00 ` Navid Afkhami [this message]
2023-02-02 23:25   ` bug#61229: [PATCH 2/2] gnu: Add python-demuxem Ricardo Wurmus
2023-02-02 23:25 ` bug#61230: [PATCH 1/2] gnu: Add python-pegasusio Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20230202160023.45975-2-navid.afkhami@mdc-berlin.de \
    --to=navid.afkhami@mdc-berlin.de \
    --cc=61229@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).