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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=aefyvNj1; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none) X-TUID: /jvjIOLD6iH/ * gnu/packages/bioinformatics.scm (python-demuxem): New variable. --- gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6caf0e4cfa..406f8616c7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1090,6 +1090,35 @@ (define-public python-cmseq and sequence consensus.") (license license:expat))) +(define-public python-demuxem + (package + (name "python-demuxem") + (version "0.1.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "demuxEM" version)) + (sha256 + (base32 + "1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-docopt + python-importlib-metadata + python-numpy + python-pandas + python-pegasusio + python-scikit-learn + python-scipy + python-seaborn)) + (native-inputs (list python-cython python-setuptools-scm)) + (home-page "https://github.com/lilab-bcb/demuxEM") + (synopsis + "This is a module on analyzing cell-hashing/nucleus-hashing data") + (description + "This is a module on analyzing cell-hashing/nucleus-hashing data. +It is the demultiplexing module of Pegasus, which is used by Cumulus +in demultiplexing step.") + (license license:bsd-3))) + (define-public python-hclust2 (package (name "python-hclust2") -- 2.34.1