From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <60997@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#60997] [PATCH 4/4] gnu: Add python-metaphlan.
Date: Sun, 22 Jan 2023 01:49:51 +0100 [thread overview]
Message-ID: <20230122004951.119277-4-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-metaphlan): New variable.
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c9c222d59..884e5aa1e5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11234,6 +11234,43 @@ (define-public python-biothings-client
API services.")
(license license:bsd-3)))
+(define-public python-metaphlan
+ (package
+ (name "python-metaphlan")
+ (version "4.0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "MetaPhlAn" version))
+ (sha256
+ (base32
+ "1jw29m8p8bcwn4q5qvh8s96qlgqv1kaizbmm87jk55f34k1y3y8a"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:tests? #f)) ;pypi no tests
+ (propagated-inputs
+ (list python-biom-format
+ python-biopython
+ python-cmseq
+ python-dendropy
+ python-h5py
+ python-hclust2
+ python-numpy
+ python-pandas
+ python-phylophlan
+ python-pysam
+ python-requests
+ python-scipy))
+ (home-page "http://github.com/biobakery/MetaPhlAn/")
+ (synopsis "Metagenomic phylogenetic analysis")
+ (description
+ "MetaPhlAn is a computational tool for profiling the composition of microbial
+communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing
+data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module,
+it is now possible to perform accurate strain-level microbial profiling.")
+ (license license:expat)))
+
(define-public python-multivelo
(package
(name "python-multivelo")
--
2.39.1
next prev parent reply other threads:[~2023-01-22 0:51 UTC|newest]
Thread overview: 8+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-22 0:44 [bug#60997] [patch] gnu: Add python-cmseq, python-cmseq, python-phylophlan and python-metaphlan MadalinIonel.Patrascu
2023-01-22 0:49 ` [bug#60997] [PATCH 1/4] gnu: Add python-cmseq Mădălin Ionel Patrașcu
2023-01-22 0:49 ` [bug#60997] [PATCH 2/4] gnu: Add python-hclust2 Mădălin Ionel Patrașcu
2023-01-22 0:49 ` [bug#60997] [PATCH 3/4] gnu: Add python-phylophlan Mădălin Ionel Patrașcu
2023-01-24 9:10 ` Ricardo Wurmus
2023-01-22 0:49 ` Mădălin Ionel Patrașcu [this message]
2023-01-24 9:11 ` [bug#60997] [PATCH 4/4] gnu: Add python-metaphlan Ricardo Wurmus
2023-01-24 8:36 ` [bug#60997] [PATCH 1/4] gnu: Add python-cmseq Ricardo Wurmus
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