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From: Ricardo Wurmus <rekado@elephly.net>
To: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
Cc: 60997@debbugs.gnu.org
Subject: [bug#60997] [PATCH 4/4] gnu: Add python-metaphlan.
Date: Tue, 24 Jan 2023 10:11:36 +0100	[thread overview]
Message-ID: <87cz74e1ji.fsf@elephly.net> (raw)
In-Reply-To: <20230122004951.119277-4-madalinionel.patrascu@mdc-berlin.de>


Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (python-metaphlan): New variable.

Unfortunately, this one is also incomplete.

The package includes R code that needs to have its dependencies
satisfied.  It also calls out to bowtie2, and needs raxml, muscle,
blast, etc.

The clash of biopython versions will also need to be addressed.

I’ll push as much as is feasible, but I’d like to ask you to rework this
package definition in particular.

Thanks!

-- 
Ricardo




  reply	other threads:[~2023-01-24  9:16 UTC|newest]

Thread overview: 8+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-01-22  0:44 [bug#60997] [patch] gnu: Add python-cmseq, python-cmseq, python-phylophlan and python-metaphlan MadalinIonel.Patrascu
2023-01-22  0:49 ` [bug#60997] [PATCH 1/4] gnu: Add python-cmseq Mădălin Ionel Patrașcu
2023-01-22  0:49   ` [bug#60997] [PATCH 2/4] gnu: Add python-hclust2 Mădălin Ionel Patrașcu
2023-01-22  0:49   ` [bug#60997] [PATCH 3/4] gnu: Add python-phylophlan Mădălin Ionel Patrașcu
2023-01-24  9:10     ` Ricardo Wurmus
2023-01-22  0:49   ` [bug#60997] [PATCH 4/4] gnu: Add python-metaphlan Mădălin Ionel Patrașcu
2023-01-24  9:11     ` Ricardo Wurmus [this message]
2023-01-24  8:36   ` [bug#60997] [PATCH 1/4] gnu: Add python-cmseq Ricardo Wurmus

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