* [bug#56279] [PATCH] gnu: Add r-barcodetrackr.
@ 2022-06-28 15:00 Mădălin Ionel Patrașcu
2022-10-27 14:02 ` bug#56279: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-06-28 15:00 UTC (permalink / raw)
To: 56279
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dd3d813398 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,48 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-barcodetrackr
+ (package
+ (name "r-barcodetrackr")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "barcodetrackR" version))
+ (sha256
+ (base32
+ "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"))))
+ (properties `((upstream-name . "barcodetrackR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-circlize
+ r-cowplot
+ r-dplyr
+ r-ggdendro
+ r-ggplot2
+ r-ggridges
+ r-magrittr
+ r-plyr
+ r-proxy
+ r-rcolorbrewer
+ r-rlang
+ r-s4vectors
+ r-scales
+ r-shiny
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr
+ r-vegan
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/dunbarlabNIH/barcodetrackR")
+ (synopsis "Functions for analyzing cellular barcoding data")
+ (description
+ "This package @code{barcodetrackR} is developed for the analysis and
+visualization of clonal tracking data. The required data is formed by samples
+and tag abundances in matrix form. Usually from cellular barcoding experiments,
+integration site retrieval analyses, or similar technologies.")
+ (license license:cc0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#56279: [PATCH] gnu: Add r-barcodetrackr.
2022-06-28 15:00 [bug#56279] [PATCH] gnu: Add r-barcodetrackr Mădălin Ionel Patrașcu
@ 2022-10-27 14:02 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-10-27 14:02 UTC (permalink / raw)
To: 56279-done
Applied with minor changes, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2022-06-28 15:00 [bug#56279] [PATCH] gnu: Add r-barcodetrackr Mădălin Ionel Patrașcu
2022-10-27 14:02 ` bug#56279: " Ricardo Wurmus
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