unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 56279@debbugs.gnu.org
Subject: [bug#56279] [PATCH] gnu: Add r-barcodetrackr.
Date: Tue, 28 Jun 2022 17:00:44 +0200	[thread overview]
Message-ID: <20220628150044.2872-1-madalinionel.patrascu@mdc-berlin.de> (raw)

* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
---
 gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dd3d813398 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,48 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-barcodetrackr
+  (package
+    (name "r-barcodetrackr")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "barcodetrackR" version))
+              (sha256
+               (base32
+                "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"))))
+    (properties `((upstream-name . "barcodetrackR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-circlize
+           r-cowplot
+           r-dplyr
+           r-ggdendro
+           r-ggplot2
+           r-ggridges
+           r-magrittr
+           r-plyr
+           r-proxy
+           r-rcolorbrewer
+           r-rlang
+           r-s4vectors
+           r-scales
+           r-shiny
+           r-summarizedexperiment
+           r-tibble
+           r-tidyr
+           r-vegan
+           r-viridis))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/dunbarlabNIH/barcodetrackR")
+    (synopsis "Functions for analyzing cellular barcoding data")
+    (description
+     "This package @code{barcodetrackR} is developed for the analysis and
+visualization of clonal tracking data.  The required data is formed by samples
+and tag abundances in matrix form.  Usually from cellular barcoding experiments,
+integration site retrieval analyses, or similar technologies.")
+    (license license:cc0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1





             reply	other threads:[~2022-06-28 15:02 UTC|newest]

Thread overview: 2+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-06-28 15:00 Mădălin Ionel Patrașcu [this message]
2022-10-27 14:02 ` bug#56279: [PATCH] gnu: Add r-barcodetrackr Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20220628150044.2872-1-madalinionel.patrascu@mdc-berlin.de \
    --to=madalinionel.patrascu@mdc-berlin.de \
    --cc=56279@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).