From: zimoun <zimon.toutoune@gmail.com>
To: 43345@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43345] [PATCH 07/12] gnu: r-seqminer: Move to (gnu packages cran).
Date: Fri, 11 Sep 2020 20:08:44 +0200 [thread overview]
Message-ID: <20200911180849.12582-7-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here ...
* gnu/packages/cran.scm (r-seqminer): ... to here.
---
gnu/packages/bioinformatics.scm | 22 ----------------------
gnu/packages/cran.scm | 22 ++++++++++++++++++++++
2 files changed, 22 insertions(+), 22 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4de52f3aaa..40c6363859 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9393,28 +9393,6 @@ imaging data that can be used in subsequent analyses to adjust for unknown,
unmodeled, or latent sources of noise.")
(license license:artistic2.0)))
-(define-public r-seqminer
- (package
- (name "r-seqminer")
- (version "8.0")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "seqminer" version))
- (sha256
- (base32
- "00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i"))))
- (build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
- (home-page "http://seqminer.genomic.codes")
- (synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)")
- (description
- "This package provides tools to integrate nucleotide sequencing
-data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.")
- ;; Any version of the GPL is acceptable
- (license (list license:gpl2+ license:gpl3+))))
-
(define-public r-raremetals2
(package
(name "r-raremetals2")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bd36e1bacb..5d1e248cc4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -23754,3 +23754,25 @@ Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the
@code{R/qtl} package to better handle high-dimensional data and complex cross
designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
(license license:gpl3)))
+
+(define-public r-seqminer
+ (package
+ (name "r-seqminer")
+ (version "8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "seqminer" version))
+ (sha256
+ (base32
+ "00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i"))))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "http://seqminer.genomic.codes")
+ (synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)")
+ (description
+ "This package provides tools to integrate nucleotide sequencing
+data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.")
+ ;; Any version of the GPL is acceptable
+ (license (list license:gpl2+ license:gpl3+))))
--
2.28.0
next prev parent reply other threads:[~2020-09-11 18:12 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-11 18:05 [bug#43345] [PATCH 00/12] Move some CRAN packages to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 01/12] gnu: r-codedepends: Comment why is in bioconductor.scm zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 02/12] gnu: r-adaptivesparsity: Move to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 03/12] gnu: r-diffusionmap: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 04/12] gnu: r-igraph: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 05/12] gnu: r-qtl: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 06/12] gnu: r-qtl2: " zimoun
2020-09-11 18:08 ` zimoun [this message]
2020-09-11 18:08 ` [bug#43345] [PATCH 08/12] gnu: r-maldiquant: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 09/12] gnu: r-seurat: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 11/12] gnu: r-diversitree: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 12/12] gnu: r-absfiltergsea: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 10/12] gnu: r-phangorn: " zimoun
2020-09-11 20:07 ` bug#43345: [PATCH 00/12] Move some CRAN packages " Ricardo Wurmus
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