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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 11 Sep 2020 18:10:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 43345 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43345@debbugs.gnu.org Cc: zimoun Received: via spool by 43345-submit@debbugs.gnu.org id=B43345.159984775620587 (code B ref 43345); Fri, 11 Sep 2020 18:10:05 +0000 Received: (at 43345) by debbugs.gnu.org; 11 Sep 2020 18:09:16 +0000 Received: from localhost ([127.0.0.1]:45408 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnU3-0005Ly-Vd for submit@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:16 -0400 Received: from mail-wm1-f47.google.com ([209.85.128.47]:51831) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnTt-0005Jb-Oz for 43345@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:07 -0400 Received: by mail-wm1-f47.google.com with SMTP id w2so5235295wmi.1 for <43345@debbugs.gnu.org>; Fri, 11 Sep 2020 11:09:05 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=DC9LGphwg8FNV6wdNdnfvc/UbvGnL7lSnpYElAq8Onk=; b=eRTtY/OSAv682UmjtH02QbMIa6gMKuNLfRlu5CL7ycPSHsMjxFzAiLcaoHwz9cXts6 Xvc8jRzYnbKMlYCD/gMDk2h9HCWcJPz+jVYwHtZMXoZPg1cYIMSSyRSR4H5f+RvhPHI2 vBUbFKLNF8m+dddLTKMcK2jVhxwYRGde6/8e8TOIDQ/yMY1sUBHFc0L1+gI9BRGJXmuN fTJ5DikzzoBeXa2XKO8mqfZlyaHgIfmL6V872a4fE+wh38Uu1pSqgH97u3ERfVh4BE8p y/WZzKxp4BordYU1D0WFLxWixBYuAC/yf6jnvpmcsakX4LztCMLSJYE+JZcc8G1p0f1I c9+A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=DC9LGphwg8FNV6wdNdnfvc/UbvGnL7lSnpYElAq8Onk=; b=OCIIHiF5A9UmX31ph1EBKzgT1bdkYus5oNUdYV8LEWKJfdo9jtYrC7iqDWS6qZpJiG LPTHjopSqgjMXEfJv0lxdq2iEgVXliS3AOMCwJKx2JpVQhA68pPA9b0zNhsySu4wZCnr dE9iTRcc5LprzUB6ffQqp+K3fwjujp4Hyyxav8mKT1tIQkNGBcFnpQXz8brFc1chX+Pc dyJSHUsnbRDpUyRX88d8osCgf085IQu4CTtVf2hpS2cvC7vYOoxRn3LTHxKNJwbZ82s0 R6ogG0RuPCI/vAHHghNK7J/47GoqBXac3CbnDNa/JTIoMSyNCLus+aMkns3HNzITJNOI Oe0g== X-Gm-Message-State: AOAM532EKoshtNC8y179Yta0QQvbHBVUhHuyPPeT9QVnQlvLwNIUlMZD zBj4kdKYcW9cQ42G5OL5cbqrPG0Ff0c= X-Google-Smtp-Source: ABdhPJwXW+arJ04AvW3WrlSK0y9yDam+sgRJediTOGzSYjxklFxD8y4QN+p8CTj9StVVw7LW3ekrOA== X-Received: by 2002:a7b:cb81:: with SMTP id m1mr3561776wmi.140.1599847739668; Fri, 11 Sep 2020 11:08:59 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id y1sm5914005wmd.22.2020.09.11.11.08.58 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 11 Sep 2020 11:08:58 -0700 (PDT) From: zimoun Date: Fri, 11 Sep 2020 20:08:44 +0200 Message-Id: <20200911180849.12582-7-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com> References: <20200911180849.12582-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Scanner: scn0 Authentication-Results: aspmx2.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=eRTtY/OS; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx2.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Spam-Score: 4.09 X-TUID: FWw0F4Xkcx3k * gnu/packages/bioinformatics.scm (r-seqminer): Move from here ... * gnu/packages/cran.scm (r-seqminer): ... to here. --- gnu/packages/bioinformatics.scm | 22 ---------------------- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 2 files changed, 22 insertions(+), 22 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4de52f3aaa..40c6363859 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9393,28 +9393,6 @@ imaging data that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise.") (license license:artistic2.0))) -(define-public r-seqminer - (package - (name "r-seqminer") - (version "8.0") - (source - (origin - (method url-fetch) - (uri (cran-uri "seqminer" version)) - (sha256 - (base32 - "00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i")))) - (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) - (home-page "http://seqminer.genomic.codes") - (synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)") - (description - "This package provides tools to integrate nucleotide sequencing -data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.") - ;; Any version of the GPL is acceptable - (license (list license:gpl2+ license:gpl3+)))) - (define-public r-raremetals2 (package (name "r-raremetals2") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bd36e1bacb..5d1e248cc4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23754,3 +23754,25 @@ Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the @code{R/qtl} package to better handle high-dimensional data and complex cross designs. Broman et al. (2018) .") (license license:gpl3))) + +(define-public r-seqminer + (package + (name "r-seqminer") + (version "8.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "seqminer" version)) + (sha256 + (base32 + "00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i")))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (home-page "http://seqminer.genomic.codes") + (synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)") + (description + "This package provides tools to integrate nucleotide sequencing +data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.") + ;; Any version of the GPL is acceptable + (license (list license:gpl2+ license:gpl3+)))) -- 2.28.0