From: zimoun <zimon.toutoune@gmail.com>
To: 43345@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#43345] [PATCH 05/12] gnu: r-qtl: Move to (gnu packages cran).
Date: Fri, 11 Sep 2020 20:08:42 +0200 [thread overview]
Message-ID: <20200911180849.12582-5-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-qtl): Move from here ...
* gnu/packages/cran.scm (r-qtl): ... to here.
---
gnu/packages/bioinformatics.scm | 25 -------------------------
gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
2 files changed, 26 insertions(+), 25 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cab3df222c..ae728f09dc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8510,31 +8510,6 @@ Stephens (1990).")
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
-(define-public r-qtl
- (package
- (name "r-qtl")
- (version "1.46-2")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "mirror://cran/src/contrib/qtl_"
- version ".tar.gz"))
- (sha256
- (base32
- "0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a"))))
- (build-system r-build-system)
- (home-page "https://rqtl.org/")
- (synopsis "R package for analyzing QTL experiments in genetics")
- (description "R/qtl is an extension library for the R statistics
-system. It is used to analyze experimental crosses for identifying
-genes contributing to variation in quantitative traits (so-called
-quantitative trait loci, QTLs).
-
-Using a hidden Markov model, R/qtl estimates genetic maps, to
-identify genotyping errors, and to perform single-QTL and two-QTL,
-two-dimensional genome scans.")
- (license license:gpl3)))
-
(define-public r-qtl2
(package
(name "r-qtl2")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 717bd36d4d..868f660e41 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -23701,3 +23702,28 @@ It can handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and much
more.")
(license license:gpl2+)))
+
+(define-public r-qtl
+ (package
+ (name "r-qtl")
+ (version "1.46-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://cran/src/contrib/qtl_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a"))))
+ (build-system r-build-system)
+ (home-page "https://rqtl.org/")
+ (synopsis "R package for analyzing QTL experiments in genetics")
+ (description "R/qtl is an extension library for the R statistics
+system. It is used to analyze experimental crosses for identifying
+genes contributing to variation in quantitative traits (so-called
+quantitative trait loci, QTLs).
+
+Using a hidden Markov model, R/qtl estimates genetic maps, to
+identify genotyping errors, and to perform single-QTL and two-QTL,
+two-dimensional genome scans.")
+ (license license:gpl3)))
--
2.28.0
next prev parent reply other threads:[~2020-09-11 18:17 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-09-11 18:05 [bug#43345] [PATCH 00/12] Move some CRAN packages to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 01/12] gnu: r-codedepends: Comment why is in bioconductor.scm zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 02/12] gnu: r-adaptivesparsity: Move to (gnu packages cran) zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 03/12] gnu: r-diffusionmap: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 04/12] gnu: r-igraph: " zimoun
2020-09-11 18:08 ` zimoun [this message]
2020-09-11 18:08 ` [bug#43345] [PATCH 06/12] gnu: r-qtl2: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 07/12] gnu: r-seqminer: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 08/12] gnu: r-maldiquant: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 09/12] gnu: r-seurat: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 11/12] gnu: r-diversitree: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 12/12] gnu: r-absfiltergsea: " zimoun
2020-09-11 18:08 ` [bug#43345] [PATCH 10/12] gnu: r-phangorn: " zimoun
2020-09-11 20:07 ` bug#43345: [PATCH 00/12] Move some CRAN packages " Ricardo Wurmus
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