* [PATCH] gnu: Add ruby-bio-kseq.
@ 2016-06-10 9:48 Ben Woodcroft
2016-06-13 13:33 ` Thompson, David
0 siblings, 1 reply; 3+ messages in thread
From: Ben Woodcroft @ 2016-06-10 9:48 UTC (permalink / raw)
To: guix-devel
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6a90aa9..90d577d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3926,6 +3926,34 @@ clusters.")
(home-page "https://sourceforge.net/projects/pardre/")
(license license:gpl3+)))
+(define-public ruby-bio-kseq
+ (package
+ (name "ruby-bio-kseq")
+ (version "0.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-kseq" version))
+ (sha256
+ (base32
+ "1xyaha46khb5jc6wzkbf7040jagac49jbimn0vcrzid0j8jdikrz"))))
+ (build-system ruby-build-system)
+ (arguments
+ `(#:test-target "spec"))
+ (native-inputs
+ `(("bundler" ,bundler)
+ ("ruby-rspec" ,ruby-rspec)
+ ("ruby-rake-compiler" ,ruby-rake-compiler)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (synopsis "Ruby bindings for the kseq.h FASTA/Q parser")
+ (description
+ "@code{Bio::Kseq} provides ruby bindings to the @code{kseq.h} FASTA and
+FASTQ parsing code. It provides a fast iterator over sequences and their
+quality scores.")
+ (home-page "https://github.com/gusevfe/bio-kseq")
+ (license license:expat)))
+
(define-public bio-locus
(package
(name "bio-locus")
--
2.7.4
^ permalink raw reply related [flat|nested] 3+ messages in thread* Re: [PATCH] gnu: Add ruby-bio-kseq.
2016-06-10 9:48 [PATCH] gnu: Add ruby-bio-kseq Ben Woodcroft
@ 2016-06-13 13:33 ` Thompson, David
2016-06-13 22:32 ` Ben Woodcroft
0 siblings, 1 reply; 3+ messages in thread
From: Thompson, David @ 2016-06-13 13:33 UTC (permalink / raw)
To: Ben Woodcroft; +Cc: guix-devel
On Fri, Jun 10, 2016 at 5:48 AM, Ben Woodcroft <donttrustben@gmail.com> wrote:
> * gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
LGTM!
- Dave
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: [PATCH] gnu: Add ruby-bio-kseq.
2016-06-13 13:33 ` Thompson, David
@ 2016-06-13 22:32 ` Ben Woodcroft
0 siblings, 0 replies; 3+ messages in thread
From: Ben Woodcroft @ 2016-06-13 22:32 UTC (permalink / raw)
To: Thompson, David, Ben Woodcroft; +Cc: guix-devel
On 13/06/16 23:33, Thompson, David wrote:
> On Fri, Jun 10, 2016 at 5:48 AM, Ben Woodcroft <donttrustben@gmail.com> wrote:
>> * gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
> LGTM!
Thanks Dave, pushed.
^ permalink raw reply [flat|nested] 3+ messages in thread
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2016-06-10 9:48 [PATCH] gnu: Add ruby-bio-kseq Ben Woodcroft
2016-06-13 13:33 ` Thompson, David
2016-06-13 22:32 ` Ben Woodcroft
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