From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: [PATCH] gnu: Add ruby-bio-kseq. Date: Fri, 10 Jun 2016 19:48:08 +1000 Message-ID: <1465552088-28413-1-git-send-email-donttrustben@gmail.com> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:35217) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bBJ39-0000f1-FK for guix-devel@gnu.org; Fri, 10 Jun 2016 05:48:24 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bBJ35-0004Wn-95 for guix-devel@gnu.org; Fri, 10 Jun 2016 05:48:22 -0400 Received: from mail-pf0-x231.google.com ([2607:f8b0:400e:c00::231]:34942) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bBJ35-0004WG-2T for guix-devel@gnu.org; Fri, 10 Jun 2016 05:48:19 -0400 Received: by mail-pf0-x231.google.com with SMTP id c2so22232662pfa.2 for ; Fri, 10 Jun 2016 02:48:18 -0700 (PDT) Received: from localhost.localdomain ([103.25.181.216]) by smtp.googlemail.com with ESMTPSA id y70sm16279021pff.25.2016.06.10.02.48.14 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-SHA bits=128/128); Fri, 10 Jun 2016 02:48:16 -0700 (PDT) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6a90aa9..90d577d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3926,6 +3926,34 @@ clusters.") (home-page "https://sourceforge.net/projects/pardre/") (license license:gpl3+))) +(define-public ruby-bio-kseq + (package + (name "ruby-bio-kseq") + (version "0.0.2") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-kseq" version)) + (sha256 + (base32 + "1xyaha46khb5jc6wzkbf7040jagac49jbimn0vcrzid0j8jdikrz")))) + (build-system ruby-build-system) + (arguments + `(#:test-target "spec")) + (native-inputs + `(("bundler" ,bundler) + ("ruby-rspec" ,ruby-rspec) + ("ruby-rake-compiler" ,ruby-rake-compiler))) + (inputs + `(("zlib" ,zlib))) + (synopsis "Ruby bindings for the kseq.h FASTA/Q parser") + (description + "@code{Bio::Kseq} provides ruby bindings to the @code{kseq.h} FASTA and +FASTQ parsing code. It provides a fast iterator over sequences and their +quality scores.") + (home-page "https://github.com/gusevfe/bio-kseq") + (license license:expat))) + (define-public bio-locus (package (name "bio-locus") -- 2.7.4