unofficial mirror of guix-devel@gnu.org 
 help / color / mirror / code / Atom feed
From: Ben Woodcroft <donttrustben@gmail.com>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add ruby-bio-kseq.
Date: Fri, 10 Jun 2016 19:48:08 +1000	[thread overview]
Message-ID: <1465552088-28413-1-git-send-email-donttrustben@gmail.com> (raw)

* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
---
 gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6a90aa9..90d577d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3926,6 +3926,34 @@ clusters.")
     (home-page "https://sourceforge.net/projects/pardre/")
     (license license:gpl3+)))
 
+(define-public ruby-bio-kseq
+  (package
+    (name "ruby-bio-kseq")
+    (version "0.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (rubygems-uri "bio-kseq" version))
+       (sha256
+        (base32
+         "1xyaha46khb5jc6wzkbf7040jagac49jbimn0vcrzid0j8jdikrz"))))
+    (build-system ruby-build-system)
+    (arguments
+     `(#:test-target "spec"))
+    (native-inputs
+     `(("bundler" ,bundler)
+       ("ruby-rspec" ,ruby-rspec)
+       ("ruby-rake-compiler" ,ruby-rake-compiler)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (synopsis "Ruby bindings for the kseq.h FASTA/Q parser")
+    (description
+     "@code{Bio::Kseq} provides ruby bindings to the @code{kseq.h} FASTA and
+FASTQ parsing code.  It provides a fast iterator over sequences and their
+quality scores.")
+    (home-page "https://github.com/gusevfe/bio-kseq")
+    (license license:expat)))
+
 (define-public bio-locus
   (package
     (name "bio-locus")
-- 
2.7.4

             reply	other threads:[~2016-06-10  9:48 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-06-10  9:48 Ben Woodcroft [this message]
2016-06-13 13:33 ` [PATCH] gnu: Add ruby-bio-kseq Thompson, David
2016-06-13 22:32   ` Ben Woodcroft

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=1465552088-28413-1-git-send-email-donttrustben@gmail.com \
    --to=donttrustben@gmail.com \
    --cc=guix-devel@gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).