From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 15/16] gnu: Add r-msnbase.
Date: Tue, 17 Jan 2017 15:11:40 +0100 [thread overview]
Message-ID: <20170117141141.11694-16-rekado@elephly.net> (raw)
In-Reply-To: <20170117141141.11694-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bc7b0be1a..abe5c9294 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8422,3 +8422,44 @@ accurate missing value estimation. A set of methods for printing and plotting
the results is also provided. All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
+
+(define-public r-msnbase
+ (package
+ (name "r-msnbase")
+ (version "2.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MSnbase" version))
+ (sha256
+ (base32
+ "0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"))))
+ (properties `((upstream-name . "MSnbase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-digest" ,r-digest)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-impute" ,r-impute)
+ ("r-iranges" ,r-iranges)
+ ("r-maldiquant" ,r-maldiquant)
+ ("r-mzid" ,r-mzid)
+ ("r-mzr" ,r-mzr)
+ ("r-pcamethods" ,r-pcamethods)
+ ("r-plyr" ,r-plyr)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-vsn" ,r-vsn)
+ ("r-xml" ,r-xml)))
+ (home-page "https://github.com/lgatto/MSnbase")
+ (synopsis "Base functions and classes for MS-based proteomics")
+ (description
+ "This package provides basic plotting, data manipulation and processing
+of MS-based proteomics data.")
+ (license license:artistic2.0)))
--
2.11.0
next prev parent reply other threads:[~2017-01-17 14:12 UTC|newest]
Thread overview: 28+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-01-17 14:11 [PATCH 00/16] Bioinfo stuff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 01/16] gnu: Add python-argparse Ricardo Wurmus
2017-01-17 14:49 ` Hartmut Goebel
2017-01-17 15:26 ` Ricardo Wurmus
2017-01-17 18:48 ` Alex Kost
2017-01-17 18:47 ` Alex Kost
2017-01-17 14:11 ` [PATCH 02/16] gnu: Add hisat2 Ricardo Wurmus
2017-01-17 20:36 ` Leo Famulari
2017-01-17 20:49 ` Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 03/16] gnu: Add ribodiff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 04/16] gnu: Add r-compquadform Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 05/16] gnu: Add r-seqminer Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 06/16] gnu: Add r-raremetals2 Ricardo Wurmus
2017-01-20 13:16 ` Ludovic Courtès
2017-01-20 14:18 ` Ricardo Wurmus
2017-01-20 21:26 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 07/16] gnu: Add r-maldiquant Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 08/16] gnu: Add r-protgenerics Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 09/16] gnu: Add r-mzr Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 10/16] gnu: Add r-affyio Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 11/16] gnu: Add r-affy Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 12/16] gnu: Add r-vsn Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 13/16] gnu: Add r-mzid Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 14/16] gnu: Add r-pcamethods Ricardo Wurmus
2017-01-17 14:11 ` Ricardo Wurmus [this message]
2017-01-20 13:17 ` [PATCH 15/16] gnu: Add r-msnbase Ludovic Courtès
2017-01-20 13:18 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 16/16] gnu: Add r-msnid Ricardo Wurmus
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