From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 09/16] gnu: Add r-mzr.
Date: Tue, 17 Jan 2017 15:11:34 +0100 [thread overview]
Message-ID: <20170117141141.11694-10-rekado@elephly.net> (raw)
In-Reply-To: <20170117141141.11694-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4a1bd0196..51660026e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8248,3 +8248,35 @@ as allowing spectra with different resolutions.")
"This package provides S4 generic functions needed by Bioconductor
proteomics packages.")
(license license:artistic2.0)))
+
+(define-public r-mzr
+ (package
+ (name "r-mzr")
+ (version "2.8.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mzR" version))
+ (sha256
+ (base32
+ "0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"))))
+ (properties `((upstream-name . "mzR")))
+ (build-system r-build-system)
+ (inputs
+ `(("netcdf" ,netcdf)))
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (home-page "https://github.com/sneumann/mzR/")
+ (synopsis "Parser for mass spectrometry data files")
+ (description
+ "The mzR package provides a unified API to the common file formats and
+parsers available for mass spectrometry data. It comes with a wrapper for the
+ISB random access parser for mass spectrometry mzXML, mzData and mzML files.
+The package contains the original code written by the ISB, and a subset of the
+proteowizard library for mzML and mzIdentML. The netCDF reading code has
+previously been used in XCMS.")
+ (license license:artistic2.0)))
--
2.11.0
next prev parent reply other threads:[~2017-01-17 14:12 UTC|newest]
Thread overview: 28+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-01-17 14:11 [PATCH 00/16] Bioinfo stuff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 01/16] gnu: Add python-argparse Ricardo Wurmus
2017-01-17 14:49 ` Hartmut Goebel
2017-01-17 15:26 ` Ricardo Wurmus
2017-01-17 18:48 ` Alex Kost
2017-01-17 18:47 ` Alex Kost
2017-01-17 14:11 ` [PATCH 02/16] gnu: Add hisat2 Ricardo Wurmus
2017-01-17 20:36 ` Leo Famulari
2017-01-17 20:49 ` Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 03/16] gnu: Add ribodiff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 04/16] gnu: Add r-compquadform Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 05/16] gnu: Add r-seqminer Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 06/16] gnu: Add r-raremetals2 Ricardo Wurmus
2017-01-20 13:16 ` Ludovic Courtès
2017-01-20 14:18 ` Ricardo Wurmus
2017-01-20 21:26 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 07/16] gnu: Add r-maldiquant Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 08/16] gnu: Add r-protgenerics Ricardo Wurmus
2017-01-17 14:11 ` Ricardo Wurmus [this message]
2017-01-17 14:11 ` [PATCH 10/16] gnu: Add r-affyio Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 11/16] gnu: Add r-affy Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 12/16] gnu: Add r-vsn Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 13/16] gnu: Add r-mzid Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 14/16] gnu: Add r-pcamethods Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 15/16] gnu: Add r-msnbase Ricardo Wurmus
2017-01-20 13:17 ` Ludovic Courtès
2017-01-20 13:18 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 16/16] gnu: Add r-msnid Ricardo Wurmus
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