From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 14/16] gnu: Add r-pcamethods.
Date: Tue, 17 Jan 2017 15:11:39 +0100 [thread overview]
Message-ID: <20170117141141.11694-15-rekado@elephly.net> (raw)
In-Reply-To: <20170117141141.11694-1-rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4952bbe33..bc7b0be1a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8393,3 +8393,32 @@ XML package. The parser tries to be general and able to handle all types of
mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
+
+(define-public r-pcamethods
+ (package
+ (name "r-pcamethods")
+ (version "1.66.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "pcaMethods" version))
+ (sha256
+ (base32
+ "18mawhxw57pgpn87qha4mwki24gqja7wpqha8q496476vyap11xw"))))
+ (properties `((upstream-name . "pcaMethods")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/hredestig/pcamethods")
+ (synopsis "Collection of PCA methods")
+ (description
+ "This package provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
+Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method
+for missing value estimation is included for comparison. BPCA, PPCA and
+NipalsPCA may be used to perform PCA on incomplete data as well as for
+accurate missing value estimation. A set of methods for printing and plotting
+the results is also provided. All PCA methods make use of the same data
+structure (pcaRes) to provide a common interface to the PCA results.")
+ (license license:gpl3+)))
--
2.11.0
next prev parent reply other threads:[~2017-01-17 14:12 UTC|newest]
Thread overview: 28+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-01-17 14:11 [PATCH 00/16] Bioinfo stuff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 01/16] gnu: Add python-argparse Ricardo Wurmus
2017-01-17 14:49 ` Hartmut Goebel
2017-01-17 15:26 ` Ricardo Wurmus
2017-01-17 18:48 ` Alex Kost
2017-01-17 18:47 ` Alex Kost
2017-01-17 14:11 ` [PATCH 02/16] gnu: Add hisat2 Ricardo Wurmus
2017-01-17 20:36 ` Leo Famulari
2017-01-17 20:49 ` Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 03/16] gnu: Add ribodiff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 04/16] gnu: Add r-compquadform Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 05/16] gnu: Add r-seqminer Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 06/16] gnu: Add r-raremetals2 Ricardo Wurmus
2017-01-20 13:16 ` Ludovic Courtès
2017-01-20 14:18 ` Ricardo Wurmus
2017-01-20 21:26 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 07/16] gnu: Add r-maldiquant Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 08/16] gnu: Add r-protgenerics Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 09/16] gnu: Add r-mzr Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 10/16] gnu: Add r-affyio Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 11/16] gnu: Add r-affy Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 12/16] gnu: Add r-vsn Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 13/16] gnu: Add r-mzid Ricardo Wurmus
2017-01-17 14:11 ` Ricardo Wurmus [this message]
2017-01-17 14:11 ` [PATCH 15/16] gnu: Add r-msnbase Ricardo Wurmus
2017-01-20 13:17 ` Ludovic Courtès
2017-01-20 13:18 ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 16/16] gnu: Add r-msnid Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20170117141141.11694-15-rekado@elephly.net \
--to=rekado@elephly.net \
--cc=guix-devel@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).