From: Ben Woodcroft <donttrustben@gmail.com>
To: guix-devel@gnu.org
Subject: [PATCH 01/22] gnu: parallel: Use full paths for executables.
Date: Wed, 27 Jul 2016 22:54:02 +1000 [thread overview]
Message-ID: <d3453a89a3858e7455e46040f96146f52b9c24aa.1469622378.git.donttrustben@gmail.com> (raw)
In-Reply-To: <20160727125423.7768-1-donttrustben@gmail.com>
* gnu/packages/parallel.scm (parallel)[inputs]: Add procps.
[arguments]: New field.
---
gnu/packages/parallel.scm | 27 ++++++++++++++++++++++++++-
1 file changed, 26 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index 12f0028..3bb078e 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -54,7 +55,31 @@
(base32
"08gm0i9vj2nz8qgqi98z00myypgb3dni0s5yf3l17fp8h78fp4g3"))))
(build-system gnu-build-system)
- (inputs `(("perl" ,perl)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-bin-sh
+ (lambda _
+ (for-each
+ (lambda (file)
+ (substitute* file
+ ;; Patch hard coded '/bin/sh' in the lin ending in:
+ ;; $Global::shell = $ENV{'PARALLEL_SHELL'} ||
+ ;; parent_shell($$) || $ENV{'SHELL'} || "/bin/sh";
+ (("/bin/sh\\\";\n$") (string-append (which "sh") "\";\n"))
+ ;; Patch call to 'ps' and 'perl' commands.
+ ((" ps ") (string-append " " (which "ps") " "))
+ ((" perl -") (string-append " " (which "perl") " -"))))
+ (list "src/parallel" "src/sem"))))
+ (add-after 'install 'post-install-test
+ (lambda* (#:key outputs #:allow-other-keys)
+ (zero? (system* (string-append
+ (assoc-ref outputs "out") "/bin/parallel")
+ "echo"
+ ":::" "1" "2" "3")))))))
+ (inputs
+ `(("perl" ,perl)
+ ("procps" ,procps)))
(home-page "http://www.gnu.org/software/parallel/")
(synopsis "Build and execute command lines in parallel")
(description
--
2.9.1
next prev parent reply other threads:[~2016-07-27 12:54 UTC|newest]
Thread overview: 29+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-07-27 12:54 PATCH [0/22]: Add roary Ben Woodcroft
2016-07-27 12:54 ` Ben Woodcroft [this message]
2016-07-27 12:54 ` [PATCH 02/22] gnu: Add perl-xml-writer Ben Woodcroft
2016-07-27 12:54 ` [PATCH 03/22] gnu: Add perl-parse-yapp Ben Woodcroft
2016-07-27 12:54 ` [PATCH 04/22] gnu: Add perl-graph Ben Woodcroft
2016-07-27 12:54 ` [PATCH 05/22] gnu: Add perl-graph-readwrite Ben Woodcroft
2016-07-27 12:54 ` [PATCH 06/22] gnu: Add perl-log-log4perl Ben Woodcroft
2016-07-27 12:54 ` [PATCH 07/22] gnu: Add perl-file-slurper Ben Woodcroft
2016-07-27 12:54 ` [PATCH 08/22] gnu: Add perl-file-path Ben Woodcroft
2016-07-27 12:54 ` [PATCH 09/22] gnu: Add perl-file-grep Ben Woodcroft
2016-07-27 12:54 ` [PATCH 10/22] gnu: Add perl-array-utils Ben Woodcroft
2016-07-27 12:54 ` [PATCH 11/22] gnu: Add perl-test-files Ben Woodcroft
2016-07-27 12:54 ` [PATCH 12/22] gnu: Add perl-env-path Ben Woodcroft
2016-07-27 12:54 ` [PATCH 13/22] gnu: Add mcl Ben Woodcroft
2016-07-28 22:20 ` Leo Famulari
2016-07-27 12:54 ` [PATCH 14/22] gnu: Add bpp-core Ben Woodcroft
2016-07-27 12:54 ` [PATCH 15/22] gnu: Add bpp-seq Ben Woodcroft
2016-07-27 12:54 ` [PATCH 16/22] gnu: Add bpp-phyl Ben Woodcroft
2016-07-27 12:54 ` [PATCH 17/22] gnu: Add bpp-popgen Ben Woodcroft
2016-07-27 12:54 ` [PATCH 18/22] gnu: Add bppsuite Ben Woodcroft
2016-07-27 12:54 ` [PATCH 19/22] gnu: Add exonerate Ben Woodcroft
2016-07-28 22:22 ` Leo Famulari
2016-07-27 12:54 ` [PATCH 20/22] gnu: Add prank Ben Woodcroft
2016-07-27 12:54 ` [PATCH 21/22] gnu: Add raxml Ben Woodcroft
2016-07-27 12:54 ` [PATCH 22/22] gnu: Add roary Ben Woodcroft
2016-07-29 21:07 ` Leo Famulari
2016-07-28 22:31 ` [PATCH 01/22] gnu: parallel: Use full paths for executables Leo Famulari
2016-07-31 11:26 ` PATCH [0/22]: Add roary Ludovic Courtès
2016-08-08 12:16 ` Ben Woodcroft
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